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镍十四氢原卟啉肌红蛋白模型的甲烷生成和苄位的还原脱溴反应,模拟了甲基辅酶 M 还原酶。

Methane Generation and Reductive Debromination of Benzylic Position by Reconstituted Myoglobin Containing Nickel Tetradehydrocorrin as a Model of Methyl-coenzyme M Reductase.

机构信息

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan.

出版信息

Inorg Chem. 2020 Sep 8;59(17):11995-12004. doi: 10.1021/acs.inorgchem.0c00901. Epub 2020 Aug 14.

Abstract

Methyl-coenzyme M reductase (MCR), which contains the nickel hydrocorphinoid cofactor F430, is responsible for biological methane generation under anaerobic conditions via a reaction mechanism which has not been completely elucidated. In this work, myoglobin reconstituted with an artificial cofactor, nickel(I) tetradehydrocorrin (Ni(TDHC)), is used as a protein-based functional model for MCR. The reconstituted protein, rMb(Ni(TDHC)), is found to react with methyl donors such as methyl -toluenesulfonate and trimethylsulfonium iodide with methane evolution observed in aqueous media containing dithionite. Moreover, rMb(Ni(TDHC)) is found to convert benzyl bromide derivatives to reductively debrominated products without homocoupling products. The reactivity increases in the order of primary > secondary > tertiary benzylic carbons, indicating steric effects on the reaction of the nickel center with the benzylic carbon in the initial step. In addition, Hammett plots using a series of -substituted benzyl bromides exhibit enhancement of the reactivity with introduction of electron-withdrawing substituents, as shown by the positive slope against polar substituent constants. These results suggest a nucleophilic S2-type reaction of the Ni(I) species with the benzylic carbon to provide an organonickel species as an intermediate. The reaction in DO buffer at pD 7.0 causes a complete isotope shift of the product by +1 mass unit, supporting our proposal that protonation of the organonickel intermediate occurs during product formation. Although the turnover numbers are limited due to inactivation of the cofactor by side reactions, the present findings will contribute to elucidating the reaction mechanism of MCR-catalyzed methane generation from activated methyl sources and dehalogenation.

摘要

甲基辅酶 M 还原酶(MCR)含有镍氢化卟啉辅因子 F430,负责在厌氧条件下通过一个尚未完全阐明的反应机制产生生物甲烷。在这项工作中,使用与人工辅因子镍(I)十四氢卟啉(Ni(TDHC))重组的肌红蛋白作为 MCR 的基于蛋白质的功能模型。发现重组蛋白 rMb(Ni(TDHC))与甲基供体(如甲基 - 甲苯磺酸盐和三甲基碘化硫)反应,在含有连二亚硫酸盐的水介质中观察到甲烷的产生。此外,发现 rMb(Ni(TDHC))将苄基溴化物衍生物转化为还原脱溴产物,而没有同偶联产物。反应性按伯 > 仲 > 叔苄基碳原子的顺序增加,表明镍中心与苄基碳原子在初始步骤中的反应受到空间位阻的影响。此外,使用一系列 - 取代的苄基溴化物的 Hammett 图显示出随着吸电子取代基的引入反应性增强,这表现为与极性取代基常数的正斜率。这些结果表明 Ni(I)物种与苄基碳的亲核 S2 型反应提供了作为中间体的有机镍物种。在 pD 7.0 的 DO 缓冲液中的反应导致产物通过 +1 质量单位的完全同位素位移,支持我们的提议,即产物形成过程中发生了有机镍中间体的质子化。尽管由于侧反应使辅因子失活,周转率受到限制,但目前的发现将有助于阐明 MCR 催化的从活化的甲基源产生甲烷和脱卤化的反应机制。

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