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白菜杂种优势相关生物途径的转录组分析。

Transcriptome analysis of biological pathways associated with heterosis in Chinese cabbage.

机构信息

Horticulture College, Gansu Agricultural University, China; Xining Vegetable Technical Service Center, China.

Horticulture College, Northwest A & F Sci-tech University, China.

出版信息

Genomics. 2020 Nov;112(6):4732-4741. doi: 10.1016/j.ygeno.2020.08.011. Epub 2020 Aug 13.

Abstract

Chinese cabbage is an important vegetable in Asia, and high-yielding hybrids are needed to cope with the growing demand. A comparative transcriptome profiling was conducted to reveal the differentially expressed genes (DEGs) associated with heterosis in two hybrids relative to their parents. Our data suggests that heterosis is underlined by a significant upregulation of gene expression. High expression of DEGs in glycolysis and photosynthesis pathways in hybrids depicted their relation with growth and hybrid vigor. Besides, DEGs related to auxin, abscisic acid, ethylene and gibberellin were identified, implying that these hormones may boost the mechanisms of growth and developmental processes in the hybrids. Furthermore, transcription factors, including bHLH, ERF, MYB and WRKY were predicted to regulate downstream genes linked to hybrid vigor. Collectively, the present study will be helpful for a better understanding of the regulation mechanisms of heterosis to aid cabbage yield improvement.

摘要

白菜是亚洲重要的蔬菜作物,为了满足不断增长的需求,需要高产的杂交种。本研究进行了比较转录组分析,以揭示与杂种优势相关的差异表达基因(DEGs)。我们的数据表明,杂种优势是由基因表达的显著上调所支撑的。杂种中糖酵解和光合作用途径的高表达 DEGs 描绘了它们与生长和杂种优势的关系。此外,还鉴定了与生长素、脱落酸、乙烯和赤霉素相关的 DEGs,表明这些激素可能促进了杂种生长和发育过程的机制。此外,预测转录因子,包括 bHLH、ERF、MYB 和 WRKY,可调节与杂种优势相关的下游基因。总的来说,本研究将有助于更好地理解杂种优势的调控机制,以提高白菜的产量。

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