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来自耐碱性细菌的RecA蛋白C末端尾巴的影响

Influence of the C-Terminal Tail of RecA Proteins from Alkaline pH-Resistant Bacterium .

作者信息

Fan Hsiu-Fang, Su Shu, Kuo Ying-An, Chen Cyuan-Ji

机构信息

Institute of Medical Science and Technology, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.

Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.

出版信息

ACS Omega. 2020 Aug 3;5(31):19868-19876. doi: 10.1021/acsomega.0c02865. eCollection 2020 Aug 11.

DOI:10.1021/acsomega.0c02865
PMID:32803083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7424711/
Abstract

--, resistant to ultraviolet, ionizing radiation, and chemicals which may cause DNA damage, was identified in Taiwan. The expression level of RecA, which has 92% sequence identity with () RecA, will be upregulated upon UV radiation. Multiple sequence alignment of RecA proteins from bacteria belonging to and the genus reveals that the C-terminal tail of RecA is shorter and contains less acidic residues than RecA. RecA exhibits a higher ATPase activity toward single-stranded (ss) DNA and efficiently promotes DNA strand exchange that a filament is first formed on ssDNA, followed by uptake of the double-stranded (ds) substrate. Moreover, RecA exhibits a pH-reaction profile for DNA strand exchange similar to Δ RecA. Later, a chimera RecA with more acidic residues in the C-terminal tail was constructed and purified. Increased negativity in the C-terminal tail makes the pH reaction profile for Chimera RecA DNA strand exchange exhibit a reaction optimum similar to RecA. To sum up, RecA exhibits reaction properties in substrate-dependent ATPase activity and DNA strand exchange similar to RecA. Our data indicate that the negativity in the C-terminal tail plays an important role in the regulation of pH-dependent DNA strand exchange activity.

摘要

在台湾发现了一种对紫外线、电离辐射和可能导致DNA损伤的化学物质具有抗性的物质。与()RecA具有92%序列同一性的RecA的表达水平在紫外线辐射后会上调。对属于和属的细菌的RecA蛋白进行多序列比对发现,RecA的C末端尾巴比RecA短,且酸性残基更少。RecA对单链(ss)DNA表现出更高的ATP酶活性,并能有效地促进DNA链交换,即首先在ssDNA上形成细丝,然后摄取双链(ds)底物。此外,RecA对DNA链交换表现出与ΔRecA相似的pH反应曲线。后来,构建并纯化了一种在C末端尾巴中含有更多酸性残基的嵌合体RecA。C末端尾巴中负电荷的增加使得嵌合体RecA DNA链交换反应的pH曲线呈现出与RecA相似的反应最佳值。综上所述,RecA在底物依赖性ATP酶活性和DNA链交换方面表现出与RecA相似的反应特性。我们的数据表明,C末端尾巴中的负电荷在pH依赖性DNA链交换活性的调节中起重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/09f49f787720/ao0c02865_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/95bddf16ef19/ao0c02865_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/eeaa88814bbc/ao0c02865_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/c02cb85b560b/ao0c02865_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/6f288db0048d/ao0c02865_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/dcacee8503ed/ao0c02865_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/09f49f787720/ao0c02865_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/95bddf16ef19/ao0c02865_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/eeaa88814bbc/ao0c02865_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/c02cb85b560b/ao0c02865_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/6f288db0048d/ao0c02865_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/dcacee8503ed/ao0c02865_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e89/7424711/09f49f787720/ao0c02865_0006.jpg

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Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):E10059-E10068. doi: 10.1073/pnas.1812753115. Epub 2018 Oct 8.
2
RecA requires two molecules of Mg2+ ions for its optimal strand exchange activity in vitro.RecA 在体外进行最佳链交换活性需要两个分子的 Mg2+ 离子。
Nucleic Acids Res. 2018 Mar 16;46(5):2548-2559. doi: 10.1093/nar/gky048.
3
ATPase activity tightly regulates RecA nucleofilaments to promote homologous recombination.
ATP酶活性严格调控RecA核丝以促进同源重组。
Cell Discov. 2017 Jan 17;3:16053. doi: 10.1038/celldisc.2016.53. eCollection 2017.
4
RecA: Regulation and Mechanism of a Molecular Search Engine.RecA:一种分子搜索引擎的调控与机制
Trends Biochem Sci. 2016 Jun;41(6):491-507. doi: 10.1016/j.tibs.2016.04.002. Epub 2016 May 4.
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An Overview of the Molecular Mechanisms of Recombinational DNA Repair.重组DNA修复的分子机制概述
Cold Spring Harb Perspect Biol. 2015 Nov 2;7(11):a016410. doi: 10.1101/cshperspect.a016410.
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Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure.将关于同源重组的多尺度数据整合到基于RecA-ssDNA/dsDNA结构模拟的新识别机制中。
Nucleic Acids Res. 2015 Dec 2;43(21):10251-63. doi: 10.1093/nar/gkv883. Epub 2015 Sep 17.
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Enhanced DNA binding affinity of RecA protein from Deinococcus radiodurans.耐辐射球菌RecA蛋白增强的DNA结合亲和力。
DNA Repair (Amst). 2015 Jul;31:91-6. doi: 10.1016/j.dnarep.2015.05.002. Epub 2015 May 5.
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Biochemical characterization of RecA variants that contribute to extreme resistance to ionizing radiation.有助于对电离辐射产生极端抗性的RecA变体的生化特性
DNA Repair (Amst). 2015 Feb;26:30-43. doi: 10.1016/j.dnarep.2014.12.001. Epub 2014 Dec 9.
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Investigating Deinococcus radiodurans RecA protein filament formation on double-stranded DNA by a real-time single-molecule approach.实时单分子方法研究抗辐射球菌 RecA 蛋白丝在双链 DNA 上的形成。
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Developing single-molecule TPM experiments for direct observation of successful RecA-mediated strand exchange reaction.开发单分子 TPM 实验,直接观察成功的 RecA 介导的链交换反应。
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