Gupta Manoj Kumar, Vadde Ramakrishna
Department of Biotechnology & Bioinformatics, Yogi Vemana University, Kadapa, Andhra Pradesh, 516005, India.
Genetica. 2020 Dec;148(5-6):269-282. doi: 10.1007/s10709-020-00101-7. Epub 2020 Aug 17.
The recently developed phylogenomic approach provides a unique way to identify disease risk or protective allele in any organism. While risk alleles evolve mostly under purifying selection, protective alleles are evolving either under balancing or positive selection. Owing to insufficient information, authors employed the phylogenomic approach to detect the nature of selection acting on type 2 diabetes (T2D) genes in Drosophila genus using various models of CODEML utility of PAML. The obtained result revealed that T2D gene sequences are evolving under purifying selection. However, only a few sites in membrane proteins encoded via CG8051, ZnT35C, and kar, are significantly evolving under positive selection under specific scenarios, which might be because of positive or adaptive evolution in response to changing niche, diet or other factors. In the near future, this information will be highly useful in the field of evolutionary medicine and the drug discovery process.
最近开发的系统发育基因组学方法提供了一种独特的方式来识别任何生物体中的疾病风险或保护性等位基因。虽然风险等位基因大多在纯化选择下进化,但保护性等位基因则在平衡选择或正选择下进化。由于信息不足,作者采用系统发育基因组学方法,使用PAML的CODEML实用程序的各种模型,来检测果蝇属中作用于2型糖尿病(T2D)基因的选择性质。获得的结果表明,T2D基因序列在纯化选择下进化。然而,在特定情况下,通过CG8051、ZnT35C和kar编码的膜蛋白中只有少数位点在正选择下显著进化,这可能是由于对不断变化的生态位、饮食或其他因素的正向或适应性进化。在不久的将来,这些信息在进化医学和药物发现过程中将非常有用。