Department of Microbiology and Immunology at the Doherty Institute, University of Melbourne, Melbourne, Australia, 3000.
Department of Microbiology and Immunology at the Doherty Institute, University of Melbourne, Melbourne, Australia, 3000.
Curr Opin Chem Biol. 2021 Feb;60:47-54. doi: 10.1016/j.cbpa.2020.07.010. Epub 2020 Aug 24.
The advent of the genomic era has opened up enormous possibilities for the discovery of new natural products. Also known as specialized metabolites, these compounds produced by bacteria, fungi, and plants have long been sought for their bioactive properties. Innovations in both DNA sequencing technologies and bioinformatics now allow the wealth of sequence data to be mined at both the genome and metagenome levels for new specialized metabolites. However, a key problem that remains is rapidly and efficiently linking these identified genes to their corresponding compounds. Within this review, we provide specific examples of studies that have used the power of genomic or metagenomic data to overcome these problems and identify new small molecules and their biosynthetic pathways.
基因组时代的到来为发现新的天然产物开辟了巨大的可能性。这些被称为特殊代谢产物的化合物由细菌、真菌和植物产生,长期以来因其生物活性特性而备受关注。DNA 测序技术和生物信息学的创新现在使得在基因组和宏基因组水平上对丰富的序列数据进行挖掘,以寻找新的特殊代谢产物成为可能。然而,仍然存在一个关键问题,即如何快速有效地将这些鉴定出的基因与其相应的化合物联系起来。在这篇综述中,我们提供了具体的研究实例,这些研究利用基因组或宏基因组数据的力量克服了这些问题,并鉴定了新的小分子及其生物合成途径。