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呼吸道合胞病毒 RNA 依赖性 RNA 聚合酶复合物的生化特性。

Biochemical Characterization of Respiratory Syncytial Virus RNA-Dependent RNA Polymerase Complex.

机构信息

Infectious Diseases, Novartis Institutes for Biomedical Research, Emeryville, California 94608, United States.

Global Discovery Chemistry, Novartis Institutes for Biomedical Research, Emeryville, California 94608, United States.

出版信息

ACS Infect Dis. 2020 Oct 9;6(10):2800-2811. doi: 10.1021/acsinfecdis.0c00554. Epub 2020 Sep 22.

Abstract

RNA-dependent RNA polymerases (RdRPs) from nonsegmented negative strand (NNS) RNA viruses perform both mRNA transcription and genome replication, and these activities are regulated by their interactions with RNA and other accessory proteins within the ribonucleoprotein (RNP) complex. Detailed biochemical characterization of these enzymatic activities and their regulation is essential for understanding the life cycles of many pathogenic RNA viruses and for antiviral drug discovery. We developed biochemical and biophysical kinetic methods to study the RNA synthesis and RNA binding activities of respiratory syncytial virus (RSV) L/P RdRP. We determined that the intact L protein is essential for RdRP activity, and in truncated L protein constructs, RdRP activity is abrogated due to their deficiency in RNA template binding. These results are in agreement with the observation of an RNA template-binding tunnel at the interface of RdRP and capping domains in RSV and vesicular stomatitis virus (VSV) L protein cryo-EM structures. We also describe nonradiometric assays for measuring RNA binding and RNA polymerization activity of RSV RdRP, which are amenable to compound screening and profiling.

摘要

非节段负链(NNS)RNA 病毒的 RNA 依赖的 RNA 聚合酶(RdRPs)既能进行 mRNA 转录,又能进行基因组复制,这些活性受其与核糖核蛋白(RNP)复合物中的 RNA 和其他辅助蛋白相互作用的调节。对这些酶活性及其调控的详细生化特性研究对于理解许多致病性 RNA 病毒的生命周期和抗病毒药物的发现至关重要。我们开发了生化和生物物理动力学方法来研究呼吸道合胞病毒(RSV)L/P RdRP 的 RNA 合成和 RNA 结合活性。我们确定完整的 L 蛋白是 RdRP 活性所必需的,在截短的 L 蛋白构建体中,由于它们缺乏 RNA 模板结合,RdRP 活性被阻断。这些结果与 RSV 和水疱性口炎病毒(VSV)L 蛋白 cryo-EM 结构中 RdRP 和加帽结构域界面处存在 RNA 模板结合隧道的观察结果一致。我们还描述了用于测量 RSV RdRP 的 RNA 结合和 RNA 聚合活性的非放射性测定法,这些方法适用于化合物筛选和分析。

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