Vector Molecular Biology Section, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA.
BMC Genomics. 2020 Sep 4;21(1):608. doi: 10.1186/s12864-020-07025-8.
Sand flies are the vectors of Leishmania parasites. To develop in the sand fly midgut, Leishmania multiplies and undergoes various stage differentiations giving rise to the infective form, the metacyclic promastigotes. To determine the changes in sand fly midgut gene expression caused by the presence of Leishmania, we performed RNA-Seq of uninfected and Leishmania infantum-infected Lutzomyia longipalpis midguts from seven different libraries corresponding to time points which cover the various Leishmania developmental stages.
The combined transcriptomes resulted in the de novo assembly of 13,841 sand fly midgut transcripts. Importantly, only 113 sand fly transcripts, about 1%, were differentially expressed in the presence of Leishmania parasites. Further, we observed distinct differentially expressed sand fly midgut transcripts corresponding to the presence of each of the various Leishmania stages suggesting that each parasite stage influences midgut gene expression in a specific manner. Two main patterns of sand fly gene expression modulation were noted. At early time points (days 1-4), more transcripts were down-regulated by Leishmania infection at large fold changes (> 32 fold). Among the down-regulated genes, the transcription factor Forkhead/HNF-3 and hormone degradation enzymes were differentially regulated on day 2 and appear to be the upstream regulators of nutrient transport, digestive enzymes, and peritrophic matrix proteins. Conversely, at later time points (days 6 onwards), most of the differentially expressed transcripts were up-regulated by Leishmania infection with small fold changes (< 32 fold). The molecular functions of these genes have been associated with the metabolism of lipids and detoxification of xenobiotics.
Overall, our data suggest that the presence of Leishmania produces a limited change in the midgut transcript expression profile in sand flies. Further, Leishmania modulates sand fly gene expression early on in the developmental cycle in order to overcome the barriers imposed by the midgut, yet it behaves like a commensal at later time points where a massive number of parasites in the anterior midgut results only in modest changes in midgut gene expression.
沙蝇是利什曼原虫的传播媒介。为了在沙蝇中肠内发育,利什曼原虫会增殖并经历各种阶段分化,产生感染形式,即循环前鞭毛体。为了确定利什曼原虫存在对沙蝇中肠基因表达的变化,我们对来自七个不同文库的未感染和感染婴儿利什曼原虫的长角血蜱中肠进行了 RNA-Seq,这些文库时间点涵盖了各种利什曼原虫发育阶段。
联合转录组产生了 13841 个沙蝇中肠转录本的从头组装。重要的是,只有 113 个沙蝇转录本(约 1%)在利什曼原虫存在时差异表达。此外,我们观察到不同的差异表达的沙蝇中肠转录本对应于各种利什曼原虫阶段的存在,表明每个寄生虫阶段以特定的方式影响中肠基因表达。注意到两种主要的沙蝇基因表达调控模式。在早期(第 1-4 天),更多的转录本被利什曼原虫感染以较大的折叠变化(>32 倍)下调。在下调的基因中,转录因子 Forkhead/HNF-3 和激素降解酶在第 2 天被差异调控,似乎是营养物质转运、消化酶和围食膜蛋白的上游调节剂。相反,在后期(第 6 天以后),大多数差异表达的转录本被利什曼原虫感染上调,折叠变化较小(<32 倍)。这些基因的分子功能与脂质代谢和外源性物质解毒有关。
总的来说,我们的数据表明,利什曼原虫的存在会导致沙蝇中肠转录表达谱发生有限的变化。此外,利什曼原虫在发育周期的早期调节沙蝇基因表达,以克服中肠带来的障碍,但在后期,大量寄生虫在前中肠只会导致中肠基因表达的适度变化,此时它表现为共生体。