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长链非编码 RNA CCAT2 的全面探索:基于 33 种癌症类型和 13285 例的泛癌症分析。

A Comprehensive Exploration of the lncRNA CCAT2: A Pan-Cancer Analysis Based on 33 Cancer Types and 13285 Cases.

机构信息

The Second School of Clinical Medicine, Southern Medical University, Guangzhou, Guangdong Province, 510515, China.

Department of General Surgery, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong Province, 510080, China.

出版信息

Dis Markers. 2020 Feb 24;2020:5354702. doi: 10.1155/2020/5354702. eCollection 2020.

Abstract

Whether the lncRNA CCAT2 expression level affects the clinical progression and outcome of cancer patients has not yet been fully elucidated. There is still an inconsistent view regarding the correlation between CCAT2 expression and clinicopathological factors, including survival data. Besides, the regulation mechanism of CCAT2 in human cancer is still unclear. Our study analyzed a large number of publication data and TCGA databases to identify the association of CCAT2 expression with clinicopathological factors and to explore the regulatory mechanisms in human cancers. We designed a comprehensive study to determine the expression of CCAT2 in human cancer by designing a meta-analysis of 20 selected studies and the TCGA database, using StataSE 12.0 to explore the relationship between CCAT2 expression and both the prognosis and clinicopathological features of 33 cancer types and 13285 tumor patients. Moreover, we performed GO and KEGG pathway enrichment analyses on potential target genes of CCAT2 collected from GEPIA and LncRNA2Target V2.0. The level of CCAT2 expression in tumor tissues is higher than that in paired normal tissues and is significantly associated with a poor prognosis in cancer patients. Besides, overexpression of CCAT2 was significantly associated with tumor size, clinical stage, and TNM classification. Meanwhile, CCAT2 expression is the highest in stage II of human cancer, followed by stage III. Finally, 111 validated target gene symbols were identified, and GO and KEGG demonstrated that the CCAT2 validation target was significantly enriched in several pathways, including microRNAs in the cancer pathway. In summary, CCAT2 can be a potential biomarker associated with the progression and prognosis of human cancer.

摘要

CCAT2 表达水平是否影响癌症患者的临床进展和结局尚未完全阐明。CCAT2 表达与包括生存数据在内的临床病理因素之间的相关性仍然存在不一致的观点。此外,CCAT2 在人类癌症中的调控机制尚不清楚。我们的研究分析了大量的已发表数据和 TCGA 数据库,以确定 CCAT2 表达与临床病理因素的相关性,并探讨人类癌症中的调控机制。我们设计了一项综合研究,通过对 20 项选定研究和 TCGA 数据库进行荟萃分析,使用 StataSE 12.0 来确定 CCAT2 在人类癌症中的表达,以探讨 CCAT2 表达与 33 种癌症类型和 13285 名肿瘤患者的预后和临床病理特征之间的关系。此外,我们对从 GEPIA 和 LncRNA2Target V2.0 收集的 CCAT2 的潜在靶基因进行了 GO 和 KEGG 通路富集分析。肿瘤组织中 CCAT2 的表达水平高于配对的正常组织,并且与癌症患者的预后不良显著相关。此外,CCAT2 的过表达与肿瘤大小、临床分期和 TNM 分类显著相关。同时,CCAT2 在人类癌症的 II 期表达最高,其次是 III 期。最后,鉴定出 111 个验证的靶基因符号,GO 和 KEGG 表明 CCAT2 验证靶基因在包括癌症途径中的 microRNAs 在内的几个途径中显著富集。总之,CCAT2 可以作为与人类癌症进展和预后相关的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f3f/7060419/a148cd18726a/DM2020-5354702.001.jpg

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