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基于竞争性内源性 RNA 网络探究肺腺癌中 DNA 甲基化与免疫相关基因的相关性。

Investigating the correlation between DNA methylation and immune‑associated genes of lung adenocarcinoma based on a competing endogenous RNA network.

机构信息

College of Information Engineering, Shanghai Maritime University, Shanghai 201306, P.R. China.

Department of Biochemistry, Rowan University and Guava Medicine, Glassboro, NJ 08028, USA.

出版信息

Mol Med Rep. 2020 Oct;22(4):3173-3182. doi: 10.3892/mmr.2020.11445. Epub 2020 Aug 19.

Abstract

In recent years, there have been major breakthroughs in immunotherapies for the treatment of cancer. However, different patients have different responses to immunotherapy. Numerous studies have shown that the accumulation of epigenetic abnormalities, such as DNA methylation, serve an important role in the immune response of lung adenocarcinoma (LUAD). To investigate the effects of DNA methylation on tumor immunity with survival and prognosis, relevant studies can be performed based on the regulatory mechanisms of RNA molecules. For example, long non‑coding RNAs (lncRNAs), which regulate gene expression through epigenetic levels. By constructing an immune-associated competitive endogenous RNA (ceRNA) network, the present study identified the regulatory associations among 3 key immune‑associations mRNAs, 2 microRNAs (miRs) and 29 lncRNAs that were closely associated with the prognosis of patients with LUAD. The molecular biology analysis indicated that hypomethylation of the 1101320‑1104290 regions of chromosome 1 resulted in the low expression levels of LINC00337 and that LINC00337 may affect the expression levels of CHEK1 by competitively binding with human (has)‑miR‑373 and hsa‑miR‑195. Therefore, abnormal DNA methylation in lncRNA‑associated regions caused their abnormal expression levels, which further affected the interactions between RNA molecules. The interactions between these RNA molecules may have regulatory effects on tumor immunity and the prognosis of patients with LUAD.

摘要

近年来,癌症治疗的免疫疗法取得了重大突破。然而,不同的患者对免疫疗法有不同的反应。许多研究表明,表观遗传异常的积累,如 DNA 甲基化,在肺腺癌 (LUAD) 的免疫反应中起着重要作用。为了研究 DNA 甲基化对肿瘤免疫与生存和预后的影响,可以基于 RNA 分子的调控机制进行相关研究。例如,长链非编码 RNA (lncRNA) 通过表观遗传水平调节基因表达。通过构建免疫相关的竞争性内源性 RNA (ceRNA) 网络,本研究鉴定了 3 个关键免疫相关 mRNAs、2 个 microRNAs (miRs) 和 29 个与 LUAD 患者预后密切相关的 lncRNAs 之间的调控关系。分子生物学分析表明,染色体 1 的 1101320-1104290 区域的低甲基化导致 LINC00337 的低表达水平,并且 LINC00337 可能通过与人类 (has)-miR-373 和 hsa-miR-195 竞争结合来影响 CHEK1 的表达水平。因此,lncRNA 相关区域的异常 DNA 甲基化导致其异常表达水平,进而影响 RNA 分子之间的相互作用。这些 RNA 分子之间的相互作用可能对 LUAD 患者的肿瘤免疫和预后具有调节作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/458a/7453503/7392a3f19be8/MMR-22-04-3173-g00.jpg

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