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嗜冷北极菌 Sphingomonas sp. 中葡萄糖 6-磷酸脱氢酶活性和稳定性的活性部位芳香族残基 Tyr 或 Phe 的影响

Effect of active-site aromatic residues Tyr or Phe on activity and stability of glucose 6-phosphate dehydrogenase from psychrophilic Arctic bacterium Sphingomonas sp.

机构信息

Department of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan 38453, South Korea.

Department of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan 38453, South Korea.

出版信息

Biochim Biophys Acta Proteins Proteom. 2021 Jan;1869(1):140543. doi: 10.1016/j.bbapap.2020.140543. Epub 2020 Sep 20.

DOI:10.1016/j.bbapap.2020.140543
PMID:32966894
Abstract

Cold-adapted enzymes maintain correct conformation at their active sites despite their intrinsically flexible structures. The psychrophilic Arctic bacterium Sphingomonas sp. PAMC 26621 has two glucose 6-phosphate dehydrogenase (G6PD) isozymes, SpG6PD1 involved in the Entner-Doudoroff pathway and SpG6PD2 in the oxidative pentose phosphate pathway. Structural modeling of SpG6PD1 showed that the hydroxyl group of Tyr participates in substrate binding by forming a hydrogen bond with the phosphate group of glucose 6-phosphate, whereas in SpG6PD2, a Phe residue is present in the corresponding position of Tyr. In this study, we investigated how subtle differences in aromatic residues in the substrate-binding pocket of SpG6PD1 affect enzymatic activity and stability. Mutations of Tyr to Ala, His, Phe, and Trp caused increases in the rigidity of the SpG6PD1 structure. Particularly, mutants Y177F and Y177W showed increased thermal stabilities compared to wild-type (WT) but 3- and 15-fold lower catalytic efficiencies, respectively. However, mutants Y177A and Y177H became heat-labile at moderate temperatures. These results indicate that an aromatic residue (Tyr or Phe) is necessary for the substrate-binding pocket of SpG6PD1; Tyr with its hydroxyl group is preferred for enzymatic activity, whereas the more hydrophobic Phe is preferred for thermal stability. Substitutions of bulky Trp for Tyr or Phe at this position resulted in substantial loss of activity. Our study suggests that delicate adjustment of aromatic residues can regulate the activity and stability of psychrophilic G6PD isozymes involved in different metabolic pathways.

摘要

尽管冷适应酶的结构具有内在的灵活性,但它们仍能在活性部位保持正确的构象。极地嗜冷菌 Sphingomonas sp. PAMC 26621 有两种葡萄糖 6-磷酸脱氢酶(G6PD)同工酶,SpG6PD1 参与 Entner-Doudoroff 途径,SpG6PD2 参与氧化戊糖磷酸途径。SpG6PD1 的结构建模表明,Tyr 的羟基通过与葡萄糖 6-磷酸的磷酸基团形成氢键参与底物结合,而在 SpG6PD2 中,Tyr 对应的位置存在一个 Phe 残基。在这项研究中,我们研究了 SpG6PD1 底物结合口袋中芳香族残基的细微差异如何影响酶的活性和稳定性。将 Tyr 突变为 Ala、His、Phe 和 Trp 会增加 SpG6PD1 结构的刚性。特别是突变体 Y177F 和 Y177W 与野生型相比,热稳定性增加,但催化效率分别降低了 3 倍和 15 倍。然而,突变体 Y177A 和 Y177H 在中等温度下变得不稳定。这些结果表明,芳香族残基(Tyr 或 Phe)是 SpG6PD1 底物结合口袋所必需的;具有羟基的 Tyr 有利于酶活性,而疏水性更强的 Phe 则有利于热稳定性。在该位置用较大的 Trp 替代 Tyr 或 Phe 会导致活性显著丧失。我们的研究表明,对芳香族残基的精细调整可以调节参与不同代谢途径的嗜冷 G6PD 同工酶的活性和稳定性。

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