Marcotuli Ilaria, Mazzeo Andrea, Colasuonno Pasqualina, Terzano Roberto, Nigro Domenica, Porfido Carlo, Tarantino Annalisa, Aiese Cigliano Riccardo, Sanseverino Walter, Gadaleta Agata, Ferrara Giuseppe
Department of Environmental and Territorial Sciences, University of Bari "Aldo Moro", Bari, Italy.
Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Bari, Italy.
Front Plant Sci. 2020 Aug 21;11:1208. doi: 10.3389/fpls.2020.01208. eCollection 2020.
The mechanism behind the bud evolution towards breba or main crop in . is uncertain. Anatomical and genetic studies may put a light on the possible similarities/differences between the two types of fruits. For this reason, we collected complimentary data from anatomical, X-ray imaging, and genetic techniques. The RNA seq together with structural genome annotation allowed the prediction of 34,629 known genes and 938 novel protein-coding genes. Transcriptome analysis of genes during bud differentiation revealed differentially expressed genes in two fig varieties (Dottato and Petrelli) and in breba and main crop. We chose Dottato and Petrelli because the first variety does not require pollination to set main crop and the latter does; moreover, Petrelli yields many brebas whereas Dottato few. Of the 1,615 and 1,904 loci expressed in Dottato and Petrelli, specifically in breba or main crop, respectively, only 256 genes appeared to be transcripts in both varieties. The buds of the two fig varieties were observed under optical microscope and using 3D X-ray tomography, highlighting differences mainly related to the stage of development. The X-ray images of buds showed a great structural similarity between breba and main crop during the initial stages of development. Analysis at the microscope indicated that inflorescence differentiation of breba was split in two seasons whereas that of main crop started at the end of winter of season 2 and was completed within 2 to 3 months. The higher expression of floral homeotic protein AGAMOUS in breba with respect to main crop, since this protein is required for normal development of stamens and carpels in the flower, may indicate an original role of these fruits for staminate flowers production for pollination of the main crop, as profichi in the caprifig. Several genes related to auxin (auxin efflux carrier, auxin response factor, auxin binding protein, auxin responsive protein) and to GA synthesis (GA20ox) were highly expressed in brebas with respect to main crop for the development of this parthenocarpic fruit.
无花果中芽向夏果或冬果演化背后的机制尚不确定。解剖学和遗传学研究可能会揭示这两种果实类型之间可能存在的异同。因此,我们从解剖学、X射线成像和遗传学技术收集了补充数据。RNA测序与结构基因组注释共同预测出34,629个已知基因和938个新的蛋白质编码基因。芽分化过程中基因的转录组分析揭示了两个无花果品种(多塔托和彼得雷利)以及夏果和冬果中差异表达的基因。我们选择多塔托和彼得雷利是因为第一个品种结冬果不需要授粉,而后者需要;此外,彼得雷利能结出许多夏果,而多塔托则很少。在多塔托和彼得雷利中分别在夏果或冬果中表达的1,615个和1,904个基因座中,只有256个基因似乎在两个品种中都是转录本。在光学显微镜下并使用三维X射线断层扫描观察了两个无花果品种的芽,突出了主要与发育阶段相关的差异。芽的X射线图像显示,在发育初期,夏果和冬果之间存在很大的结构相似性。显微镜分析表明,夏果的花序分化分为两个季节,而冬果的花序分化始于第二季冬季末,并在2至3个月内完成。与主作物相比,夏果中花同源蛋白AGAMOUS的表达较高,因为这种蛋白质是花中雄蕊和心皮正常发育所必需的,这可能表明这些果实最初具有为冬果授粉产生雄花的作用,就像野生无花果中的前期果。与生长素(生长素外流载体、生长素反应因子、生长素结合蛋白、生长素反应蛋白)和赤霉素合成(GA20氧化酶)相关的几个基因在夏果中相对于冬果高度表达,以促进这种单性结实果实的发育。