CNR-SCITEC, Istituto di Scienze e Tecnologie Chimiche "Giulio Natta", sezione di via Golgi, via C. Golgi 19, 20133 Milano, Italy.
Istituto Lombardo, Accademia di Scienze e Lettere, via Brera 28, 20100 Milano, Italy.
Molecules. 2020 Sep 25;25(19):4409. doi: 10.3390/molecules25194409.
Positive electrostatic potential () values are often associated with σ- and π-holes, regions of lower electron density which can interact with electron-rich sites to form noncovalent interactions. Factors impacting σ- and π-holes may thus be monitored in terms of the shape and values of the resulting . Further precious insights into such factors are obtained through a rigorous decomposition of the values in atomic or atomic group contributions, a task here achieved by extending the Bader-Gatti source function (SF) for the electron density to . In this article, this general methodology is applied to a series of 4,4'-bipyridine derivatives containing atoms from Groups VI (S, Se) and VII (Cl, Br), and the pentafluorophenyl group acting as a π-hole. As these molecules are characterized by a certain degree of conformational freedom due to the possibility of rotation around the two C-Ch bonds, from two to four conformational motifs could be identified for each structure through conformational search. On this basis, the impact of chemical and conformational features on σ- and π-hole regions could be systematically evaluated by computing the values on electron density isosurfaces () and by comparing and dissecting in atomic/atomic group contributions the maxima () values calculated for different molecular patterns. The results of this study confirm that both chemical and conformational features may seriously impact σ- and π-hole regions and provide a clear analysis and a rationale of why and how this influence is realized. Hence, the proposed methodology might offer precious clues for designing changes in the σ- and π-hole regions, aimed at affecting their potential involvement in noncovalent interactions in a desired way.
正静电势()值通常与σ-和π-空穴相关,这些区域电子密度较低,可与富电子位点相互作用形成非共价相互作用。因此,可以根据产生的的形状和值来监测影响σ-和π-空穴的因素。通过对原子或原子团贡献的密度值进行严格分解,可以进一步深入了解这些因素,这一任务通过将电子密度的 Bader-Gatti 源函数 (SF) 扩展到来实现。在本文中,这种通用方法应用于一系列含有来自第 VI 族(S、Se)和第 VII 族(Cl、Br)原子的 4,4'-联吡啶衍生物,以及作为π-空穴的五氟苯基基团。由于这些分子由于两个 C-Ch 键旋转的可能性而具有一定程度的构象自由度,因此可以通过构象搜索为每个结构确定两个到四个构象基序。在此基础上,可以通过在电子密度等位面()上计算值,并通过比较和分析不同分子模式计算得到的最大()值的原子/原子团贡献,系统地评估化学和构象特征对σ-和π-空穴区域的影响。这项研究的结果证实,化学和构象特征都可能严重影响σ-和π-空穴区域,并提供了一个明确的分析和解释,说明为什么以及如何实现这种影响。因此,所提出的方法可能为设计σ-和π-空穴区域的变化提供有价值的线索,旨在以期望的方式影响它们在非共价相互作用中的潜在参与。