Institute of Entomology, College of Life Sciences, Nankai University, Tianjin 300071, China.
Genes (Basel). 2020 Sep 29;11(10):1149. doi: 10.3390/genes11101149.
Chemosensory proteins (CSP) are a class of acidic soluble proteins which have various functions in chemoreception, resistance and immunity, but we still have very little knowledge on this gene family in fig wasps, a peculiar insects group (Hymenoptera, Chalcidoidea) that shelter in the fig syconia of trees. Here, we made the first comprehensive analysis of CSP gene family in the 11 fig wasps at whole-genome level. We manually annotated 104 CSP genes in the genomes of the 11 fig wasps, comprehensively analyzed them in gene characteristics, conserved cysteine patterns, motif orders, phylogeny, genome distribution, gene tandem duplication, and expansion and contraction patterns of the gene family. We also approximately predicted the gene expression by codon adaptation index analysis. Our study shows that the CSP gene family is conserved in the 11 fig wasps; the CSP gene numbers in pollinating fig wasps are less than in non-pollinating fig wasps, which may be due to their longer history of adaptation to fig syconia; the expansion of CSP gene in two non-pollinating fig wasps, and , may be a species-specific phenomenon. These results provide us with useful information for understanding the evolution of the CSP gene family of insects in diverse living environments.
化感蛋白(CSP)是一类酸性可溶性蛋白,在化感作用、抗性和免疫等方面具有多种功能,但我们对这种基因家族在特殊昆虫组(膜翅目,Chalcidoidea)中的了解还非常有限,这些昆虫栖息在榕果中。在这里,我们首次在全基因组水平上对 11 种榕小蜂的 CSP 基因家族进行了综合分析。我们手动注释了 11 种榕小蜂基因组中的 104 个 CSP 基因,全面分析了它们的基因特征、保守半胱氨酸模式、基序顺序、系统发育、基因组分布、基因串联复制以及基因家族的扩张和收缩模式。我们还通过密码子适应指数分析大致预测了基因表达。我们的研究表明,CSP 基因家族在 11 种榕小蜂中是保守的;传粉榕小蜂的 CSP 基因数量少于非传粉榕小蜂,这可能是由于它们对榕果的适应历史更长;两种非传粉榕小蜂 和 的 CSP 基因的扩张可能是一种种特异性现象。这些结果为我们理解不同生活环境中昆虫 CSP 基因家族的进化提供了有用的信息。