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[杨树幼苗茎形成层发育过程中环状RNA的鉴定与特征分析]

[Identification and Characterization of circRNAs in the Developing Stem Cambium of Poplar Seedlings].

作者信息

Zheng W Q, Zhang Y, Chen B, Wei M, Wang X W, Du L

机构信息

Beijing Advanced Innovation Center of Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083 China.

College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083 China.

出版信息

Mol Biol (Mosk). 2020 Sep-Oct;54(5):802-812. doi: 10.31857/S0026898420050134.

Abstract

Non-coding RNAs are a class of RNAs with multiple roles in plant life. Covalently closed circular RNA molecules (circRNAs) have been recently shown to be a group of RNA isoforms that show widespread tissue-specific expression in plants, often cooperating with the corresponding linear mRNAs to regulate gene function. However, no previous study of poplar has identified circRNAs in the cambium and determined their potential roles in the cambium or xylem development. In the present study, we sequenced RNAs in the cambium of poplar seedlings at two developmental stages, and identified and characterized 4912 circRNAs. Alternative back-splicing circularization events for 87 genes were identified among the circRNAs derived from different chromosomes. A total of 1138 circRNAs originated from 928 host genes, which were classified among the three major functional categories by GO analysis. Thirty-nine circRNAs were differentially expressed between cambium samples of stems at two developmental stages. Twenty-four DEcircRNAs interacted with 98 miRNAs as targets, of which some were associated with cambium growth and development. The results suggest that circRNAs play important roles in the cambium in relation to the regulation of stem growth and development in poplar seedlings.

摘要

非编码RNA是一类在植物生命中具有多种作用的RNA。共价闭合环状RNA分子(circRNAs)最近被证明是一组RNA异构体,在植物中表现出广泛的组织特异性表达,常与相应的线性mRNA协同调节基因功能。然而,之前没有关于杨树的研究在形成层中鉴定出circRNAs并确定它们在形成层或木质部发育中的潜在作用。在本研究中,我们对两个发育阶段的杨树幼苗形成层中的RNA进行了测序,鉴定并表征了4912个circRNAs。在来自不同染色体的circRNAs中鉴定出87个基因的可变反向剪接环化事件。共有1138个circRNAs来源于928个宿主基因,通过GO分析将这些宿主基因分为三大功能类别。在两个发育阶段的茎形成层样本之间,有39个circRNAs差异表达。24个差异表达的circRNAs作为靶标与98个miRNA相互作用,其中一些与形成层的生长和发育相关。结果表明,circRNAs在杨树幼苗茎生长和发育的调控中,对形成层起着重要作用。

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