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DSS1 通过变构调节 BRCA2 塔结构域的构象,该结构域具有双链 DNA 结合特异性,用于同源重组。

DSS1 allosterically regulates the conformation of the tower domain of BRCA2 that has dsDNA binding specificity for homologous recombination.

机构信息

Computational Structural Biology Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Computational Structural Biology Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

出版信息

Int J Biol Macromol. 2020 Dec 15;165(Pt A):918-929. doi: 10.1016/j.ijbiomac.2020.09.230. Epub 2020 Oct 1.

Abstract

DSS1 is an evolutionary conserved, small intrinsically disordered protein that regulates various cellular functions. Although several studies have elucidated the role of DSS1 in stabilizing BRCA2 and its importance in homologous recombination repair (HRR), yet the structural mechanism behind the stability and HRR remains elusive. In this study, using molecular dynamics simulation we show that DSS1 stabilizes linearly arranged DNA/DSS1 binding domains of BRCA2 with many native contacts. These contacts are absent in the complexes with two missense DSS1 mutants associated with germline breast cancer and somatic mouth carcinoma. Most importantly, our protein energy-based network models show DSS1 allosterically regulates the conformation of the distant tower domain of BRCA2 that has dsDNA binding specificity for HRR. We further postulate that the unique conformation of the tower domain with kinked-helices might be responsible for DNA strand invasion and initiation of HRR. Induced conformation of the tower domain by the kinked-helices is absent in the unbound BRCA2, as well as in the two mutant DSS1-BRCA2 complexes. This suggests that DSS1 allosterically regulates the tower domain conformations of BRCA2 that affects dsDNA binding, essential for HRR. Our results add a new dimension to the function of DSS1 and its role in regulating HRR.

摘要

DSS1 是一种进化上保守的、小的、固有无序的蛋白质,它调节各种细胞功能。尽管有几项研究已经阐明了 DSS1 在稳定 BRCA2 及其在同源重组修复(HRR)中的重要性,但稳定性和 HRR 的结构机制仍然难以捉摸。在这项研究中,我们使用分子动力学模拟表明,DSS1 用许多天然接触稳定线性排列的 BRCA2 的 DNA/DSS1 结合结构域。这些接触在与胚系乳腺癌和体细胞口腔癌相关的两个错义 DSS1 突变体的复合物中不存在。最重要的是,我们的蛋白质能量基础网络模型表明,DSS1 变构调节 BRCA2 远端塔结构域的构象,该塔结构域具有 HRR 的双链 DNA 结合特异性。我们进一步假设,具有扭结螺旋的塔结构域的独特构象可能负责 DNA 链入侵和 HRR 的起始。未结合的 BRCA2 以及两个突变 DSS1-BRCA2 复合物中都不存在由扭结螺旋引起的塔结构域构象。这表明 DSS1 变构调节 BRCA2 的塔结构域构象,从而影响 HRR 所必需的双链 DNA 结合。我们的结果为 DSS1 的功能及其在调节 HRR 中的作用增添了新的维度。

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