Min Weijie, Zou Chao, Dai Dongwei, Zuo Qiao, Chen Chao, Xu Jinyu, Li Yanan, Yue Zhijian
Department of Neurosurgery, Changhai Hospital, Second Military Medical University, 168 Changhai Road, Shanghai 200433, China.
J Oncol. 2020 Sep 15;2020:8297017. doi: 10.1155/2020/8297017. eCollection 2020.
In this study, genes associated with the Notch signaling pathway in gliomas were analyzed using bioinformatics and in vitro experiments. The dataset GSE22772 was downloaded from the Gene-Cloud of Biotechnology Information database. Differentially expressed genes (DEGs) between short hairpin RNA (shRNA) intervening glioma cells and control cells were screened using the unpaired test. Functional enrichment analysis was performed, and coexpression network was analyzed to identify the most important genes associated with the Notch signaling pathway. Integrin beta 1 (ITGB1) mRNA and protein levels in clinical glioma tumor samples and tumor adjacent normal tissue samples were analyzed using quantitative real-time PCR and immunohistochemistry, respectively. The relationship between ITGB1 expression and the prognosis of patients with gliomas was analyzed using the Kaplan-Meier curve. ITGB1 interference expression cell line U87 and ITGB1 overexpressing cell line were established using sh-ITGB1 and oe-ITGB1 plasmids, respectively. MTT and colony formation assays were used to detect changes in the proliferation of glioma cells. Moreover, western blotting was used to detect the expression of Notch and Hey1. A total of 7,962 DEGs were screened between shRNA intervening glioma cells and control cells, which were mainly associated with spliceosome, proteoglycans in cancer, focal adhesion, and the Notch signaling pathway. ITGB1 showed the highest expression in the coexpression network. The mRNA and protein expression of ITGB1 in glioma tumor samples was significantly higher than that in tumor adjacent normal tissue samples ( < 0.05). Overall survival time of patients in the ITGB1 low-expression group was significantly longer than that in the ITGB1 high-expression group, indicating that ITGB1 expression negatively correlated with the prognosis. Fluorescence microscopy, qRT-PCR, and western blotting confirmed the transfection efficiency of ITGB1 overexpression and interference expression in U251 and U87 cells. The MTT and colony formation assays indicated that U87 cell proliferation was significantly inhibited after intervention with ITGB1 ( < 0.05), and overexpression of ITGB1 significantly promoted U251 cell proliferation ( < 0.05). In addition, the expression of Notch and Hey1 proteins was significantly decreased after ITGB1 intervention ( < 0.05), and their expression was significantly upregulated after ITGB1 overexpression ( < 0.05). ITGB1 expression in glioma tissues was significantly higher than that in adjacent normal tissues and was negatively correlated with the survival time of patients. Therefore, ITGB1 can significantly promote proliferation of glioma cells via feedback regulation of the Notch signaling pathway.
在本研究中,使用生物信息学和体外实验分析了胶质瘤中与Notch信号通路相关的基因。数据集GSE22772从生物技术信息数据库的基因云下载。使用非配对检验筛选短发夹RNA(shRNA)干预胶质瘤细胞与对照细胞之间的差异表达基因(DEG)。进行功能富集分析,并分析共表达网络以鉴定与Notch信号通路相关的最重要基因。分别使用定量实时PCR和免疫组织化学分析临床胶质瘤肿瘤样本和肿瘤邻近正常组织样本中的整合素β1(ITGB1)mRNA和蛋白水平。使用Kaplan-Meier曲线分析ITGB1表达与胶质瘤患者预后的关系。分别使用sh-ITGB1和oe-ITGB1质粒建立ITGB1干扰表达细胞系U87和ITGB1过表达细胞系。使用MTT和集落形成试验检测胶质瘤细胞增殖的变化。此外,使用蛋白质印迹法检测Notch和Hey1的表达。在shRNA干预的胶质瘤细胞与对照细胞之间共筛选出7962个DEG,它们主要与剪接体、癌症中的蛋白聚糖、粘着斑和Notch信号通路相关。ITGB1在共表达网络中显示出最高表达。ITGB1在胶质瘤肿瘤样本中的mRNA和蛋白表达明显高于肿瘤邻近正常组织样本(<0.05)。ITGB1低表达组患者的总生存时间明显长于ITGB1高表达组,表明ITGB1表达与预后呈负相关。荧光显微镜、qRT-PCR和蛋白质印迹法证实了ITGB1在U251和U87细胞中的过表达和干扰表达的转染效率。MTT和集落形成试验表明,ITGB1干预后U87细胞增殖明显受到抑制(<0 .05),ITGB1过表达显著促进U251细胞增殖(<0.05)。此外,ITGB1干预后Notch和Hey1蛋白的表达明显降低(<0.05),ITGB1过表达后它们的表达明显上调(<0.05)。ITGB1在胶质瘤组织中的表达明显高于邻近正常组织,且与患者的生存时间呈负相关。因此,ITGB1可通过Notch信号通路的反馈调节显著促进胶质瘤细胞的增殖。