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Identification of a Prognostic Model Based on Immune-Related Genes of Lung Squamous Cell Carcinoma.

作者信息

Li Rui, Liu Xiao, Zhou Xi-Jia, Chen Xiao, Li Jian-Ping, Yin Yun-Hong, Qu Yi-Qing

机构信息

Department of Pulmonary and Critical Care Medicine, Cheeloo College of Medicine, Qilu Hospital, Shandong University, Jinan, China.

Department of Respiratory Medicine, Tai'an City Central Hospital, Tai'an, China.

出版信息

Front Oncol. 2020 Sep 2;10:1588. doi: 10.3389/fonc.2020.01588. eCollection 2020.


DOI:10.3389/fonc.2020.01588
PMID:33014809
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7493716/
Abstract

Immune-related genes (IRGs) play considerable roles in tumor immune microenvironment (IME). This research aimed to discover the differentially expressed immune-related genes (DEIRGs) based on the Cox predictive model to predict survival for lung squamous cell carcinoma (LUSC) through bioinformatics analysis. First of all, the differentially expressed genes (DEGs) were acquired based on The Cancer Genome Atlas (TCGA) using the limma R package, the DEIRGs were obtained from the ImmPort database, whereas the differentially expressed transcription factors (DETFs) were acquired from the Cistrome database. Thereafter, a TFs-mediated IRGs network was constructed to identify the candidate mechanisms for those DEIRGs in LUSC at molecular level. Moreover, Gene Ontology (GO), together with Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, was conducted for exploring those functional enrichments for DEIRGs. Besides, univariate as well as multivariate Cox regression analysis was conducted for establishing a prediction model for DEIRGs biomarkers. In addition, the relationship between the prognostic model and immunocytes was further explored through immunocyte correlation analysis. In total, 3,599 DEGs, 223 DEIRGs, and 46 DETFs were obtained from LUSC tissues and adjacent non-carcinoma tissues. According to multivariate Cox regression analysis, 10 DEIRGs (including CALCB, GCGR, HTR3A, AMH, VGF, SEMA3B, NRTN, ENG, ACVRL1, and NR4A1) were retrieved to establish a prognostic model for LUSC. Immunocyte infiltration analysis showed that dendritic cells and neutrophils were positively correlated with IRGs, which possibly exerted an important part within the IME of LUSC. Our study identifies a prognostic model based on IRGs, which is then used to predict LUSC prognosis and analyze immunocyte infiltration. This may provide a novel insight for exploring the potential IRGs in the IME of LUSC.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/86f6a07ba042/fonc-10-01588-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/aaf431199413/fonc-10-01588-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/d160ef09e34c/fonc-10-01588-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/8b5281e5ee39/fonc-10-01588-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/76ed67d0cb2d/fonc-10-01588-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/c1e8e2192681/fonc-10-01588-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/8adde8e34679/fonc-10-01588-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/9130d3ca8d10/fonc-10-01588-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/86f6a07ba042/fonc-10-01588-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/aaf431199413/fonc-10-01588-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/d160ef09e34c/fonc-10-01588-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/8b5281e5ee39/fonc-10-01588-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/76ed67d0cb2d/fonc-10-01588-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/c1e8e2192681/fonc-10-01588-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/8adde8e34679/fonc-10-01588-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/9130d3ca8d10/fonc-10-01588-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/7493716/86f6a07ba042/fonc-10-01588-g0008.jpg

相似文献

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[2]
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[3]
Prediction of Tumor Microenvironment Characteristics and Treatment Response in Lung Squamous Cell Carcinoma by Pseudogene OR7E47P-related Immune Genes.

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[4]
System analysis based on the T cell exhaustion‑related genes identifies CD38 as a novel therapy target for ovarian cancer.

Oncol Res. 2023

[5]
PIK3C2A is a prognostic biomarker that is linked to immune infiltrates in kidney renal clear cell carcinoma.

Front Immunol. 2023

[6]
A novel DNA damage repair-related signature for predicting prognositc and treatment response in non-small lung cancer.

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[7]
A novel risk score based on immune-related genes for hepatocellular carcinoma as a reliable prognostic biomarker and correlated with immune infiltration.

Front Immunol. 2022

[8]
The clinical significance of preoperative serum triglyceride, high-density lipoprotein, and low-density lipoprotein levels in lung squamous cell carcinoma.

Sci Rep. 2022-10-7

[9]
Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression.

Biomed Res Int. 2022

[10]
Characterization of a prognostic model for lung squamous cell carcinoma based on eight stemness index-related genes.

BMC Pulm Med. 2022-6-8

本文引用的文献

[1]
Immune Checkpoint Inhibition in Colorectal Cancer: Microsatellite Instability and Beyond.

Target Oncol. 2020-2

[2]
Circulating microRNAs predict the response to anti-PD-1 therapy in non-small cell lung cancer.

Genomics. 2020-3

[3]
An open source automated tumor infiltrating lymphocyte algorithm for prognosis in melanoma.

Nat Commun. 2019-11-29

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Perspectives in immunotherapy: meeting report from the "Immunotherapy Bridge 2018" (28-29 November, 2018, Naples, Italy).

J Immunother Cancer. 2019-11-29

[5]
Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis.

Front Genet. 2019-11-12

[6]
Tumor core biopsies adequately represent immune microenvironment of high-grade serous carcinoma.

Sci Rep. 2019-11-26

[7]
Targeting STAT3 and STAT5 in Tumor-Associated Immune Cells to Improve Immunotherapy.

Cancers (Basel). 2019-11-21

[8]
Association between programmed death-ligand 1 expression, immune microenvironments, and clinical outcomes in epidermal growth factor receptor mutant lung adenocarcinoma patients treated with tyrosine kinase inhibitors.

Eur J Cancer. 2019-11-21

[9]
Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma.

Aging (Albany NY). 2019-11-18

[10]
Methylation of immune synapse genes modulates tumor immunogenicity.

J Clin Invest. 2020-2-3

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