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一种基于注意力机制的深度学习方法用于利用DNA甲基化数据对精神分裂症患者进行分类

An Attention-Based Deep Learning Method for Schizophrenia Patients Classification Using DNA Methylation Data.

作者信息

Zhang Minmin, Pan Changchun, Liu Haichun, Zhang Qinting, Li Haozhe

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:172-175. doi: 10.1109/EMBC44109.2020.9175934.

Abstract

In this paper, the classification problem of schizophrenia patients from healthy controls is considered, whose goal is to explore the relationship between DNA characteristics and schizophrenia. However, the DNA methylation data has the properties of small samples in high dimension and non-Gaussian distribution which makes it hard to do classification with DNA methylation data. Hence a classification method based on deep learning is designed. We propose a feature selection method based on attention mechanism which embeds a weight gated layer in the network structure to get a task-related sparse representation of the DNA methylation data. The performance of proposed method outperforms existing feature selection methods. On a real-world data set, the classification with proposed method achieves a high accuracy.

摘要

本文考虑了从健康对照中区分精神分裂症患者的分类问题,其目的是探索DNA特征与精神分裂症之间的关系。然而,DNA甲基化数据具有高维小样本和非高斯分布的特性,这使得利用DNA甲基化数据进行分类变得困难。因此,设计了一种基于深度学习的分类方法。我们提出了一种基于注意力机制的特征选择方法,该方法在网络结构中嵌入一个权重门控层,以获得与任务相关的DNA甲基化数据的稀疏表示。所提方法的性能优于现有特征选择方法。在一个真实数据集上,使用所提方法进行分类取得了很高的准确率。

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