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基于生成对抗网络的合成样本生成在人喉表皮样癌细胞(HEp-2)图像中少数模式的有效性

Effectiveness of GAN-based Synthetic Samples Generation of Minority Patterns in HEp-2 Cell Images.

作者信息

Gupta Krati, Thapar Daksh, Bhavsar Arnav, Sao Anil K

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1376-1379. doi: 10.1109/EMBC44109.2020.9175636.

DOI:10.1109/EMBC44109.2020.9175636
PMID:33018245
Abstract

In this paper, we present a framework to address the augmentation of images for the rare and minor appearance of mitotic type staining patterns, for Human Epithelium Type2 (HEp-2) cell images. The identification of mitotic patterns among non-mitotic/interphase patterns is important in the process of diagnosis of various autoimmune disorders. This task leads to a pattern classification problem between mitotic v/s interphase. However, among the two classes, typically, the number of mitotic cells are relatively very less. Thus, in this work, we propose to generate synthetic mitotic samples, which can be used to augment the number of mitotic samples and balance the samples of mitotic and interphase patterns in classification paradigm. An effective feature representation is used, to validate the usefulness of the synthetic samples in classification task, along with a subjective validation done by a medical expert. The results demonstrate that the approach of generating and mingling synthetic samples with existing training data works well and yields good performance, with 0.98 balanced class accuracy (BcA) in one case, over a public dataset, i.e., UQ-SNP I3A Task-3 mitotic cell identification dataset.

摘要

在本文中,我们提出了一个框架,用于解决人类上皮2型(HEp-2)细胞图像中有丝分裂型染色模式罕见且出现次数较少的图像增强问题。在各种自身免疫性疾病的诊断过程中,识别非有丝分裂/间期模式中的有丝分裂模式非常重要。这项任务导致了有丝分裂与间期之间的模式分类问题。然而,在这两类中,通常有丝分裂细胞的数量相对非常少。因此,在这项工作中,我们建议生成合成有丝分裂样本,可用于增加有丝分裂样本的数量,并在分类范式中平衡有丝分裂和间期模式的样本。我们使用了一种有效的特征表示方法,以验证合成样本在分类任务中的有用性,同时还有医学专家进行的主观验证。结果表明,生成合成样本并将其与现有训练数据混合的方法效果良好,性能优异,在一个公共数据集(即UQ-SNP I3A任务-3有丝分裂细胞识别数据集)上,在一种情况下平衡类准确率(BcA)达到0.98。

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引用本文的文献

1
Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images.用于HEp-2标本医学图像中自动有丝分裂细胞检测的深度主动学习
Diagnostics (Basel). 2023 Apr 14;13(8):1416. doi: 10.3390/diagnostics13081416.