• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用树集成生成虚拟患者数据用于计算机模拟心肌病药物开发:一项比较研究

Generation of virtual patient data for in-silico cardiomyopathies drug development using tree ensembles: a comparative study.

作者信息

Pezoulas Vasileios C, Grigoriadis Grigorios I, Tachos Nikolaos S, Barlocco Fausto, Olivotto Iacopo, Fotiadis Dimitrios I

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:5343-5346. doi: 10.1109/EMBC44109.2020.9176567.

DOI:10.1109/EMBC44109.2020.9176567
PMID:33019190
Abstract

In-silico clinical platforms have been recently used as a new revolutionary path for virtual patients (VP) generation and further analysis, such as, drug development. Advanced individualized models have been developed to enhance flexibility and reliability of the virtual patient cohorts. This study focuses on the implementation and comparison of three different methodologies for generating virtual data for in-silico clinical trials. Towards this direction, three computational methods, namely: (i) the multivariate log-normal distribution (log- MVND), (ii) the supervised tree ensembles, and (iii) the unsupervised tree ensembles are deployed and evaluated against their performance towards the generation of high-quality virtual data using the goodness of fit (gof) and the dataset correlation matrix as performance evaluation measures. Our results reveal the dominance of the tree ensembles towards the generation of virtual data with similar distributions (gof values less than 0.2) and correlation patterns (average difference less than 0.03).

摘要

计算机模拟临床平台最近已被用作生成虚拟患者(VP)并进行进一步分析(如药物开发)的一条全新的革命性途径。已经开发出先进的个性化模型,以提高虚拟患者队列的灵活性和可靠性。本研究着重于实现和比较三种不同的方法,用于为计算机模拟临床试验生成虚拟数据。朝着这个方向,部署了三种计算方法,即:(i)多元对数正态分布(log-MVND),(ii)有监督树集成,以及(iii)无监督树集成,并使用拟合优度(gof)和数据集相关矩阵作为性能评估指标,针对它们在生成高质量虚拟数据方面的性能进行评估。我们的结果表明,树集成在生成具有相似分布(gof值小于0.2)和相关模式(平均差异小于0.03)的虚拟数据方面占主导地位。

相似文献

1
Generation of virtual patient data for in-silico cardiomyopathies drug development using tree ensembles: a comparative study.使用树集成生成虚拟患者数据用于计算机模拟心肌病药物开发:一项比较研究
Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:5343-5346. doi: 10.1109/EMBC44109.2020.9176567.
2
Variational Gaussian Mixture Models with robust Dirichlet concentration priors for virtual population generation in hypertrophic cardiomyopathy: a comparison study.基于稳健 Dirichlet 浓度先验的变分高斯混合模型在肥厚型心肌病虚拟人群生成中的比较研究。
Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:1674-1677. doi: 10.1109/EMBC46164.2021.9629653.
3
A computational pipeline for data augmentation towards the improvement of disease classification and risk stratification models: A case study in two clinical domains.
Comput Biol Med. 2021 Jul;134:104520. doi: 10.1016/j.compbiomed.2021.104520. Epub 2021 Jun 6.
4
Conditional distribution modeling as an alternative method for covariates simulation: Comparison with joint multivariate normal and bootstrap techniques.条件分布建模作为协变量模拟的一种替代方法:与联合多元正态和自举技术的比较。
CPT Pharmacometrics Syst Pharmacol. 2021 Apr;10(4):330-339. doi: 10.1002/psp4.12613.
5
Drug-target interaction prediction with tree-ensemble learning and output space reconstruction.基于树集成学习和输出空间重构的药物-靶标相互作用预测。
BMC Bioinformatics. 2020 Feb 7;21(1):49. doi: 10.1186/s12859-020-3379-z.
6
Tree-based models for survival data with competing risks.基于树的竞争风险生存数据分析模型。
Comput Methods Programs Biomed. 2018 Jun;159:185-198. doi: 10.1016/j.cmpb.2018.03.017. Epub 2018 Mar 21.
7
Biasing conformational ensembles towards bioactive-like conformers for ligand-based drug design.使构象系综偏向于具有生物活性的构象,以进行基于配体的药物设计。
Expert Opin Drug Discov. 2010 Oct;5(10):943-59. doi: 10.1517/17460441.2010.513711.
8
Ensembles of randomized trees using diverse distributed representations of clinical events.使用临床事件的多种分布式表示的随机树集成。
BMC Med Inform Decis Mak. 2016 Jul 21;16 Suppl 2(Suppl 2):69. doi: 10.1186/s12911-016-0309-0.
9
Network inference with ensembles of bi-clustering trees.基于二部聚类树集成的网络推断。
BMC Bioinformatics. 2019 Oct 28;20(1):525. doi: 10.1186/s12859-019-3104-y.
10
The distribution of branch lengths in phylogenetic trees.系统发育树中分支长度的分布。
Mol Phylogenet Evol. 2016 Jan;94(Pt A):136-45. doi: 10.1016/j.ympev.2015.08.010. Epub 2015 Aug 13.

引用本文的文献

1
Synthetic data generation methods in healthcare: A review on open-source tools and methods.医疗保健领域的合成数据生成方法:关于开源工具和方法的综述
Comput Struct Biotechnol J. 2024 Jul 9;23:2892-2910. doi: 10.1016/j.csbj.2024.07.005. eCollection 2024 Dec.
2
Bayesian Inference-Based Gaussian Mixture Models With Optimal Components Estimation Towards Large-Scale Synthetic Data Generation for Clinical Trials.基于贝叶斯推理的高斯混合模型,用于大规模合成数据生成的临床试验的最优成分估计。
IEEE Open J Eng Med Biol. 2022 Jun 10;3:108-114. doi: 10.1109/OJEMB.2022.3181796. eCollection 2022.