Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616-8751, U.S.A.
Mol Plant Microbe Interact. 2020 Dec;33(12):1441-1445. doi: 10.1094/MPMI-06-20-0139-A. Epub 2020 Oct 12.
is a fungus that causes black leaf mold, an important disease of tomato in tropical and subtropical regions of the world. Despite its economic importance, genomic resources for this pathogen are scarce and no reference genome was available thus far. Here, we report a 50.6-Mb genome assembly for consisting of 348 contigs with an N value of 0.407 Mb. In total, 13,764 protein-coding genes were predicted with an estimated BUSCO completeness of 98%. Among the predicted genes there were 179 candidate effectors, 445 carbohydrate-active enzymes, and 30 secondary metabolite gene clusters. The resources presented in this study will allow genome-wide comparative analyses and population genomic studies of this pathogen, ultimately improving management strategies for black leaf mold of tomato.
是一种真菌，可引起黑叶枯病，这是世界热带和亚热带地区番茄的一种重要病害。尽管该病原体具有重要的经济意义，但目前基因组资源却很稀缺，且尚未有参考基因组。在这里，我们报道了一个 50.6-Mb 的基因组组装，由 348 个 contigs 组成，N 值为 0.407 Mb。总共预测了 13764 个蛋白质编码基因，预计 BUSCO 完整性为 98%。在预测的基因中，有 179 个候选效应子、445 个碳水化合物活性酶和 30 个次生代谢物基因簇。本研究提供的资源将允许对该病原体进行全基因组比较分析和群体基因组研究，最终改善番茄黑叶枯病的管理策略。
