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环状肽可以通过高度多样化的模式与单个结合口袋结合。

Cyclic peptides can engage a single binding pocket through highly divergent modes.

机构信息

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia.

Protein-Protein Interaction Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom;

出版信息

Proc Natl Acad Sci U S A. 2020 Oct 27;117(43):26728-26738. doi: 10.1073/pnas.2003086117. Epub 2020 Oct 12.

Abstract

Cyclic peptide library screening technologies show immense promise for identifying drug leads and chemical probes for challenging targets. However, the structural and functional diversity encoded within such libraries is largely undefined. We have systematically profiled the affinity, selectivity, and structural features of library-derived cyclic peptides selected to recognize three closely related targets: the acetyllysine-binding bromodomain proteins BRD2, -3, and -4. We report affinities as low as 100 pM and specificities of up to 10-fold. Crystal structures of 13 peptide-bromodomain complexes reveal remarkable diversity in both structure and binding mode, including both α-helical and β-sheet structures as well as bivalent binding modes. The peptides can also exhibit a high degree of structural preorganization. Our data demonstrate the enormous potential within these libraries to provide diverse binding modes against a single target, which underpins their capacity to yield highly potent and selective ligands.

摘要

环肽文库筛选技术在鉴定药物先导物和针对挑战性靶标的化学探针方面显示出巨大的潜力。然而,此类文库中编码的结构和功能多样性在很大程度上尚未确定。我们系统地分析了针对三个密切相关的靶标(乙酰赖氨酸结合溴结构域蛋白 BRD2、BRD3 和 BRD4)进行选择的文库衍生的环肽的亲和力、选择性和结构特征。我们报告的亲和力低至 100 pM,特异性高达 10 倍。13 个肽-溴结构域复合物的晶体结构揭示了结构和结合模式的显著多样性,包括α-螺旋和β-折叠结构以及二价结合模式。这些肽还可以表现出高度的结构预组织。我们的数据表明,这些文库中存在针对单个靶标提供多种结合模式的巨大潜力,这支持了它们产生高效和选择性配体的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d190/7604503/7b6af51af79a/pnas.2003086117fig01.jpg

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