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利用水稻野生近缘种自然变异的铂标准参考基因组潜力。

Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice.

作者信息

Mussurova Saule, Al-Bader Noor, Zuccolo Andrea, Wing Rod A

机构信息

Center for Desert Agriculture, Biological and Environmental Sciences Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Institute of Life Sciences, Scuola Superiore Sant'Anna, Pisa, Italy.

出版信息

Front Plant Sci. 2020 Sep 23;11:579980. doi: 10.3389/fpls.2020.579980. eCollection 2020.

Abstract

As the world's population expands from 7.6 billion to 10 billion over the next 30 years, scientists and farmers across the globe must explore every angle necessary to provide a safe, stable and sustainable food supply for generations to come. Rice, and its wild relatives in the genus , will play a significant role in helping to solve this 10 billion people question due to its place as a staple food for billions. The genus is composed of 27 species that span 15 million years of evolutionary diversification and have been shown to contain a plethora of untapped adaptive traits, e.g., biotic and abiotic resistances, which can be used to improve cultivated rice. Such traits can be introduced into cultivated rice, in some cases by conventional crossing, and others genetic transformation and gene editing methods. In cases where traits are too complex to easily transfer to cultivated rice [e.g., quantitative trait loci (QTL)], an alternative strategy is to domesticate the wild relative that already contains the desired adaptive traits - i.e., "neodomestication". To utilize the genus for crop improvement and neodomestication, we first need a set of genomic resources that can be used to efficiently identify, capture, and guide molecular crop improvement. Here, we introduce the concept of platinum standard reference genome sequences (PSRefSeq) - a new standard by which contiguous near-gap free reference genomes can now be produced. By having a set of PSRefSeqs for every species we set a new bar for how crop wild relatives can be integrated into crop improvement programs.

摘要

在未来30年里,世界人口将从76亿增长到100亿,全球科学家和农民必须从各个角度探索必要的措施,为子孙后代提供安全、稳定和可持续的粮食供应。由于水稻是数十亿人的主食,水稻及其野生近缘属植物在帮助解决这100亿人口的粮食问题上将发挥重要作用。该属由27个物种组成,历经1500万年的进化分化,已被证明含有大量未开发的适应性性状,例如生物和非生物抗性,可用于改良栽培水稻。这些性状可以通过传统杂交、基因转化和基因编辑等方法引入栽培水稻。对于那些过于复杂而难以轻易转移到栽培水稻中的性状(例如数量性状基因座),另一种策略是驯化已经含有所需适应性性状的野生近缘种——即“重新驯化”。为了利用该属植物进行作物改良和重新驯化,我们首先需要一套基因组资源,用于高效识别、捕获和指导分子作物改良。在此,我们引入了铂标准参考基因组序列(PSRefSeq)的概念——这是一种新的标准,通过它现在可以产生连续的、几乎无间隙的参考基因组。通过为每个物种拥有一套PSRefSeq,我们为如何将作物野生近缘种整合到作物改良计划中设定了新的标准。

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