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延迟 CDK1-APC 反馈环的分岔和振荡动力学。

Bifurcation and oscillatory dynamics of delayed CDK1-APC feedback loop.

机构信息

Department of Mathematics, Yuxi Normal University, Yuxi 653100, People's Republic of China.

出版信息

IET Syst Biol. 2020 Oct;14(5):297-306. doi: 10.1049/iet-syb.2020.0050.

Abstract

Extensive experimental evidence has been demonstrated that the dynamics of CDK1-APC feedback loop play crucial roles in regulating cell cycle processes, but the dynamical mechanisms underlying the regulation of this loop are still not completely understood. Here, the authors systematically investigated the stability and bifurcation criteria for a delayed CDK1-APC feedback loop. They showed that the maximum reaction rate of CDK1 inactivation by APC can drive sustained oscillations of CDK1 activity ([inline-formula removed]) and APC activity ([inline-formula removed]), and the amplitude of these oscillations is increasing with the increase of the reaction rate over a wide range; a certain range of the self-activation rate for CDK1 is also significant for generating these oscillations, for too high or too low rates the oscillations cannot be generated. Moreover, they derived the sufficient conditions to determine the stability and Hopf bifurcations, and found that the sum of time delays required for activating CDK1 and APC can induce [inline-formula removed] and [inline-formula removed] to be oscillatory, even when the [inline-formula removed] and [inline-formula removed] settle in a definite stable steady state. Furthermore, they presented an explicit algorithm for the properties of periodic oscillations. Finally, numerical simulations have been presented to justify the validity of theoretical analysis.

摘要

大量实验证据表明,CDK1-APC 反馈环的动力学在调节细胞周期过程中起着至关重要的作用,但该反馈环的调节机制仍不完全清楚。在这里,作者系统地研究了延迟 CDK1-APC 反馈环的稳定性和分岔准则。他们表明,APC 对 CDK1 失活的最大反应速率可以驱动 CDK1 活性 ([inline-formula removed]) 和 APC 活性 ([inline-formula removed]) 的持续振荡,并且在很宽的范围内,这些振荡的幅度随着反应速率的增加而增加;CDK1 的自激活率的一定范围对于产生这些振荡也是重要的,因为过高或过低的速率都不能产生振荡。此外,他们推导出了确定稳定性和 Hopf 分岔的充分条件,并发现激活 CDK1 和 APC 所需的时间延迟之和可以诱导 [inline-formula removed] 和 [inline-formula removed] 产生振荡,即使 [inline-formula removed] 和 [inline-formula removed] 处于确定的稳定稳态。此外,他们提出了一种用于周期振荡特性的显式算法。最后,给出了数值模拟结果以验证理论分析的有效性。

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