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用于X射线劳厄衍射的归一化倒易矢量空间中的仪器模型优化

Instrument-model refinement in normalized reciprocal-vector space for X-ray Laue diffraction.

作者信息

Kamiński Radosław, Szarejko Dariusz, Pedersen Martin N, Hatcher Lauren E, Łaski Piotr, Raithby Paul R, Wulff Michael, Jarzembska Katarzyna N

机构信息

Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland.

Niels Bohr Institute, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark.

出版信息

J Appl Crystallogr. 2020 Sep 29;53(Pt 5):1370-1375. doi: 10.1107/S1600576720011929. eCollection 2020 Oct 1.

DOI:10.1107/S1600576720011929
PMID:33122973
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7534537/
Abstract

A simple yet efficient instrument-model refinement method for X-ray diffraction data is presented and discussed. The method is based on least-squares minimization of differences between respective normalized ( unit length) reciprocal vectors computed for adjacent frames. The approach was primarily designed to work with synchrotron X-ray Laue diffraction data collected for small-molecule single-crystal samples. The method has been shown to work well on both simulated and experimental data. Tests performed on simulated data sets for small-molecule and protein crystals confirmed the validity of the proposed instrument-model refinement approach. Finally, examination of data sets collected at both BioCARS 14-ID-B (Advanced Photon Source) and ID09 (European Synchrotron Radiation Facility) beamlines indicated that the approach is capable of retrieving goniometer parameters ( detector distance or primary X-ray beam centre) reliably, even when their initial estimates are rather inaccurate.

摘要

本文提出并讨论了一种用于X射线衍射数据的简单而有效的仪器模型优化方法。该方法基于对相邻帧计算的各自归一化(单位长度)倒易矢量之间差异的最小二乘最小化。该方法主要设计用于处理从小分子单晶样品收集的同步加速器X射线劳厄衍射数据。该方法已被证明在模拟数据和实验数据上均能良好工作。对小分子和蛋白质晶体的模拟数据集进行的测试证实了所提出的仪器模型优化方法的有效性。最后,对在生物医学先进研究中心14-ID-B(先进光子源)和ID09(欧洲同步辐射装置)光束线收集的数据集的检查表明,即使初始估计相当不准确,该方法也能够可靠地检索测角仪参数(探测器距离或初级X射线束中心)。

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本文引用的文献

1
Seed-skewness algorithm for X-ray diffraction signal detection in time-resolved synchrotron Laue photocrystallography.用于时间分辨同步辐射劳厄光晶体学中X射线衍射信号检测的种子偏度算法
J Synchrotron Radiat. 2020 Mar 1;27(Pt 2):405-413. doi: 10.1107/S1600577520000077. Epub 2020 Feb 11.
2
pinkIndexer - a universal indexer for pink-beam X-ray and electron diffraction snapshots.粉色索引器 - 一种用于粉色光束X射线和电子衍射快照的通用索引器。
Acta Crystallogr A Found Adv. 2020 Mar 1;76(Pt 2):121-131. doi: 10.1107/S2053273319015559. Epub 2020 Jan 10.
3
XGANDALF - extended gradient descent algorithm for lattice finding.XGANDALF - 用于晶格查找的扩展梯度下降算法。
Acta Crystallogr A Found Adv. 2019 Sep 1;75(Pt 5):694-704. doi: 10.1107/S2053273319010593. Epub 2019 Aug 30.
4
Impact of High Pressure on Metallophilic Interactions and Its Consequences for Spectroscopic Properties of a Model Tetranuclear Silver(I)-Copper(I) Complex in the Solid State.高压对金属亲和相互作用的影响及其对固态模型四核银(I)-铜(I)配合物光谱性质的影响。
Inorg Chem. 2018 Jul 16;57(14):8509-8520. doi: 10.1021/acs.inorgchem.8b01196. Epub 2018 Jul 3.
5
FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images.费利克斯:一种用于对X射线自由电子激光快照衍射图像中的多个微晶进行索引的算法。
J Appl Crystallogr. 2017 Jul 7;50(Pt 4):1075-1083. doi: 10.1107/S1600576717007506. eCollection 2017 Aug 1.
6
TakeTwo: an indexing algorithm suited to still images with known crystal parameters.TakeTwo:一种适用于具有已知晶体参数的静态图像的索引算法。
Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):956-65. doi: 10.1107/S2059798316010706. Epub 2016 Jul 28.
7
New methods in time-resolved Laue pump-probe crystallography at synchrotron sources.同步辐射源时间分辨劳厄泵浦-探测晶体学中的新方法。
J Synchrotron Radiat. 2015 Mar;22(2):280-7. doi: 10.1107/S1600577514026538. Epub 2015 Jan 28.
8
Shedding light on the photochemistry of coinage-metal phosphorescent materials: a time-resolved Laue diffraction study of an Ag(I)-Cu(I) tetranuclear complex.揭示硬币金属磷光材料的光化学:一种Ag(I)-Cu(I)四核配合物的时间分辨劳厄衍射研究
Inorg Chem. 2014 Oct 6;53(19):10594-601. doi: 10.1021/ic501696y. Epub 2014 Sep 19.
9
Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography.通过 100 皮秒时间分辨劳埃晶体学实时观察信号蛋白的功能。
Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19256-61. doi: 10.1073/pnas.1210938109. Epub 2012 Nov 6.
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J Synchrotron Radiat. 2012 Jul;19(Pt 4):637-46. doi: 10.1107/S0909049512022637. Epub 2012 Jun 12.