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纤毛生物中能动 DNA 复制系统的功能和演化。

The Function and Evolution of Motile DNA Replication Systems in Ciliates.

机构信息

Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.

Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.

出版信息

Curr Biol. 2021 Jan 11;31(1):66-76.e6. doi: 10.1016/j.cub.2020.09.077. Epub 2020 Oct 29.

DOI:10.1016/j.cub.2020.09.077
PMID:33125869
Abstract

DNA replication is a ubiquitous and conserved cellular process. However, regulation of DNA replication is only understood in a small fraction of organisms that poorly represent the diversity of genetic systems in nature. Here we used computational and experimental approaches to examine the function and evolution of one such system, the replication band (RB) in spirotrich ciliates, which is a localized, motile hub that traverses the macronucleus while replicating DNA. We show that the RB can take unique forms in different species, from polar bands to a "replication envelope," where replication initiates at the nuclear periphery before advancing inward. Furthermore, we identify genes involved in cellular transport, including calcium transporters and cytoskeletal regulators, that are associated with the RB and may be involved in its function and translocation. These findings highlight the evolution and diversity of DNA replication systems and provide insights into the regulation of nuclear organization and processes.

摘要

DNA 复制是一种普遍存在且保守的细胞过程。然而,DNA 复制的调控仅在一小部分生物体中得到理解,这些生物体在很大程度上不能代表自然界中遗传系统的多样性。在这里,我们使用计算和实验方法来研究复制带(RB)在旋毛类纤毛虫中的功能和进化,该复制带是一种定位于动粒的、运动的中心,在复制 DNA 的同时穿越着巨核。我们表明,RB 在不同物种中可以呈现独特的形式,从极性带到“复制包络”,其中复制在向核内推进之前,起始于核周。此外,我们鉴定了与 RB 相关的参与细胞运输的基因,包括钙转运体和细胞骨架调节剂,这些基因可能参与其功能和易位。这些发现突出了 DNA 复制系统的进化和多样性,并为核组织和过程的调控提供了新的见解。

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1
The Function and Evolution of Motile DNA Replication Systems in Ciliates.纤毛生物中能动 DNA 复制系统的功能和演化。
Curr Biol. 2021 Jan 11;31(1):66-76.e6. doi: 10.1016/j.cub.2020.09.077. Epub 2020 Oct 29.
2
Exploiting nuclear duality of ciliates to analyse topological requirements for DNA replication and transcription.利用纤毛虫的核二元性分析DNA复制和转录的拓扑学要求。
J Cell Sci. 2005 Sep 1;118(Pt 17):3973-83. doi: 10.1242/jcs.02497.
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Micronuclear and macronuclear forms of beta-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution.纤毛虫类斜管虫(Chilodonella uncinata)中β-微管蛋白基因的微核和大核形式揭示了对基因组加工和蛋白质进化的见解。
J Eukaryot Microbiol. 2007 May-Jun;54(3):275-82. doi: 10.1111/j.1550-7408.2007.00267.x.
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The unusual way to make a genetically active nucleus.制造具有基因活性细胞核的非同寻常方法。
DNA Cell Biol. 2009 Feb;28(2):71-8. doi: 10.1089/dna.2008.0806.
5
MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates.MDS_IES_DB:一种旋毛纲纤毛虫大核和小核基因数据库。
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D396-8. doi: 10.1093/nar/gki130.
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[Molecular genome organization in ciliates].[纤毛虫中的分子基因组组织]
Genetika. 2010 Sep;46(9):1192-5.
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Synthesis of pre-rRNA and mRNA is directed to a chromatin-poor compartment in the macronucleus of the spirotrichous ciliate Stylonychia lemnae.前体核糖体RNA和信使RNA的合成定位于旋毛纲纤毛虫莱氏拟尾柱虫大核中染色质较少的区域。
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A paradox: rapid evolution rates of germline-limited sequences are associated with conserved patterns of rearrangements in cryptic species of Chilodonella uncinata (Protista, Ciliophora).一个悖论:种系限制序列的快速进化率与棘尾虫属隐种(原生动物,纤毛门)中重排的保守模式相关。
Sci China Life Sci. 2018 Sep;61(9):1071-1078. doi: 10.1007/s11427-018-9333-1. Epub 2018 Jul 19.
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New insights into the macronuclear development in ciliates.纤毛虫大核发育的新见解。
Int Rev Cytol. 2007;262:219-51. doi: 10.1016/S0074-7696(07)62005-1.
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A model for the evolution of extremely fragmented macronuclei in ciliates.纤毛虫中超高度碎片化巨核的进化模型。
PLoS One. 2013 May 21;8(5):e64997. doi: 10.1371/journal.pone.0064997. Print 2013.

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