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抗 HIV 蛋白 SAMHD1 的二聚体结合态是可还原调节的。

Dimeric Hold States of Anti-HIV Protein SAMHD1 are Redox Tunable.

机构信息

Department of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai 400076, India.

Department of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229-3900, United States.

出版信息

J Chem Inf Model. 2020 Dec 28;60(12):6377-6391. doi: 10.1021/acs.jcim.0c00629. Epub 2020 Nov 2.

Abstract

The sterile α motif and histidine-aspartate domain-containing protein 1 (or SAMHD1) is a human protein that restricts HIV-1 in select terminally differentiated cells of the immune system by acting as a triphosphohydrolase, lowering dNTP pools. The functionally active form of the protein has been reported to be a tetramer where adjacent monomers are linked by GTP-Mg-dNTP cross-bridges, although some studies have also suggested the existence of a dimeric form of this protein. In this study, we have investigated the stability of SAMHD1 dimeric "hold states" as well as the role of intrachain disulfide bonds. We have found that dimeric-GTP bound SAMHD1 can exist as a viable meso-stable hold state with extensive motion in the C-terminal domain, which is quenched upon tetramer assembly. The redox switch comprised of residues C341, C350, and C522 was found to be linked to changes in the allosteric site, suggesting a mechanism for initiating tetramer disassembly. The disulfide state of the protein dimer (C341-S-S-C350 vs C341-S-S-C522) also plays a role in driving affinities for the allosteric dATP molecules. In sum, our results suggest a model wherein dimeric SAMHD1 exists as a "hold state" in the cytosol, ready to be activated by dATP concentrations, where the "tunability" of this activation is further regulated by the redox state of the enzyme.

摘要

sterile α motif 和 histidine-aspartate domain-containing protein 1(或 SAMHD1)是一种人类蛋白,通过充当三磷酸水解酶,降低 dNTP 池,限制免疫系统中某些终末分化细胞中的 HIV-1。据报道,该蛋白的功能活性形式为四聚体,相邻单体通过 GTP-Mg-dNTP 交联桥连接,尽管一些研究也表明该蛋白存在二聚体形式。在这项研究中,我们研究了 SAMHD1 二聚体“保持状态”的稳定性以及链内二硫键的作用。我们发现,结合 GTP 的二聚体 SAMHD1 可以作为一种可行的中稳态保持状态存在,在 C 末端结构域中具有广泛的运动,而在四聚体组装时会被猝灭。由残基 C341、C350 和 C522 组成的氧化还原开关与变构位点的变化相关,表明了引发四聚体解体的机制。该蛋白二聚体的二硫键状态(C341-S-S-C350 与 C341-S-S-C522)也在驱动变构 dATP 分子亲和力方面发挥作用。总之,我们的结果表明了一种模型,其中二聚体 SAMHD1 作为细胞溶胶中的“保持状态”存在,随时准备被 dATP 浓度激活,而这种激活的“可调性”进一步受到酶的氧化还原状态的调节。

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