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构建外切酶 III 驱动的集成 DNAzyme 放大器,用于高效 miRNA 检测和超低背景的细胞内成像。

Construction of an Exonuclease III-Propelled Integrated DNAzyme Amplifier for Highly Efficient microRNA Detection and Intracellular Imaging with Ultralow Background.

机构信息

College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P. R. China.

出版信息

Anal Chem. 2020 Nov 17;92(22):15069-15078. doi: 10.1021/acs.analchem.0c03073. Epub 2020 Nov 3.

Abstract

DNAzyme amplifiers show great potential in bioanalysis but their operation in living cells still remains a challenge because of the intrinsic low-abundance analytes and the undesired background interference. Herein, we constructed a simple yet versatile exonuclease III (Exo-III)-powered cascade DNAzyme amplifier with an ultralow background for highly sensitive and selective microRNA assay and even in living cells. The present DNAzyme amplifier relies on only one DNAzyme-functionalized hairpin (HP-Dz) probe that is grafted with two exposed subunits of an analyte recognition strand, through which false enzymatic digestion and DNAzyme leakage could be substantially expelled. These protruding ssDNA strands could cooperatively recognize and efficiently bind with the miR-21 analyte, releasing the blunt 3'-terminus for Exo-III digestion and then regenerating miR-21 for a new round of HP-Dz activation. This leads to the production of numerous DNAzyme units for catalyzing the cleavage of the fluorophore/quencher-tethered substrate and yielding an enormously amplified fluorescence readout. The successive Exo-III-mediated analyte regeneration and DNAzyme-involved signal amplification facilitate their ultrasensitive miR-21 assay and intracellular miR-21 imaging. Note that the present DNAzyme module could be facilely substituted with another versatile HRP-mimicking DNAzyme, thus enabling the colorimetric assay of miR-21 with naked eye observation. Overall, this robust Exo-III-propelled cascaded DNAzyme amplifier provides more general and versatile approaches for understanding miRNA functions of related biological events.

摘要

DNA zyme 放大器在生物分析中显示出巨大的潜力,但由于内源性低丰度分析物和不希望的背景干扰,它们在活细胞中的应用仍然是一个挑战。在此,我们构建了一种简单而通用的外切酶 III(Exo-III)驱动的级联 DNAzyme 放大器,具有超低背景,用于高度敏感和选择性的 microRNA 分析,甚至在活细胞中也是如此。目前的 DNAzyme 放大器仅依赖于一个 DNAzyme 功能化发夹(HP-Dz)探针,该探针带有两个暴露的分析物识别链的亚基,通过这种方式可以大大排除错误的酶消化和 DNAzyme 泄漏。这些突出的 ssDNA 链可以协同识别并有效地与 miR-21 分析物结合,释放出平头 3'-末端供 Exo-III 消化,然后再生 miR-21 进行新一轮的 HP-Dz 激活。这导致产生大量的 DNAzyme 单元,用于催化荧光团/猝灭剂连接底物的切割,并产生极大放大的荧光读出。连续的 Exo-III 介导的分析物再生和 DNAzyme 参与的信号放大促进了其超灵敏的 miR-21 分析和细胞内 miR-21 成像。请注意,当前的 DNAzyme 模块可以很容易地被另一种通用的 HRP 模拟 DNAzyme 取代,从而能够通过肉眼观察进行 miR-21 的比色测定。总的来说,这种强大的 Exo-III 推动的级联 DNAzyme 放大器为理解相关生物事件的 miRNA 功能提供了更通用和多样的方法。

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