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离子强度对水中疏水相互作用的影响:取决于溶质的大小和形状。

Influence of Ionic Strength on Hydrophobic Interactions in Water: Dependence on Solute Size and Shape.

机构信息

Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland.

出版信息

J Phys Chem B. 2020 Nov 19;124(46):10326-10336. doi: 10.1021/acs.jpcb.0c06399. Epub 2020 Nov 4.

Abstract

Hydrophobicity is a phenomenon of great importance in biology, chemistry, and biochemistry. It is defined as the interaction between nonpolar molecules or groups in water and their low solubility. Hydrophobic interactions affect many processes in water, for example, complexation, surfactant aggregation, and coagulation. These interactions play a pivotal role in the formation and stability of proteins or biological membranes. In the present study, we assessed the effect of ionic strength, solute size, and shape on hydrophobic interactions between pairs of nonpolar particles. Pairs of methane, neopentane, adamantane, fullerene, ethane, propane, butane, hexane, octane, and decane were simulated by molecular dynamics in AMBER 16.0 force field. As a solvent, TIP3P and TIP4PEW water models were used. Potential of mean force (PMF) plots of these dimers were determined at four values of ionic strength, 0, 0.04, 0.08, and 0.40 mol/dm, to observe its impact on hydrophobic interactions. The characteristic shape of PMFs with three extrema (contact minimum, solvent-separated minimum, and desolvation maximum) was observed for most of the compounds for hydrophobic interactions. Ionic strength affected hydrophobic interactions. We observed a tendency to deepen contact minima with an increase in ionic strength value in the case of spherical and spheroidal molecules. Additionally, two-dimensional distribution functions describing water density and average number of hydrogen bonds between water molecules were calculated in both water models for adamantane and hexane. It was observed that the density of water did not significantly change with the increase in ionic strength, but the average number of hydrogen bonds changed. The latter tendency strongly depends on the water model used for simulations.

摘要

疏水性是生物学、化学和生物化学中非常重要的现象。它被定义为非极性分子或基团在水中的相互作用及其低溶解度。疏水性相互作用影响水的许多过程,例如络合、表面活性剂聚集和凝聚。这些相互作用在蛋白质或生物膜的形成和稳定性中起着关键作用。在本研究中,我们评估了离子强度、溶质大小和形状对非极性粒子对之间疏水相互作用的影响。通过分子动力学在 AMBER 16.0 力场中模拟了甲烷、新戊烷、金刚烷、富勒烯、乙烷、丙烷、丁烷、己烷、辛烷和癸烷的对。使用 TIP3P 和 TIP4PEW 水模型作为溶剂。在四个离子强度值(0、0.04、0.08 和 0.40 mol/dm)下测定了这些二聚体的平均力势能(PMF)图,以观察其对疏水相互作用的影响。对于大多数化合物,观察到具有三个极值(接触最小值、溶剂分离最小值和去溶剂化最大值)的 PMF 特征形状,这表明存在疏水相互作用。离子强度影响疏水相互作用。我们观察到,对于球形和类球形分子,随着离子强度值的增加,接触最小值有加深的趋势。此外,在两种水模型中计算了描述水密度和水分子之间平均氢键数的二维分布函数,用于金刚烷和己烷。观察到水的密度随离子强度的增加没有显著变化,但平均氢键数发生了变化。后一种趋势强烈依赖于用于模拟的水模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/304a/7681779/41470389a5ee/jp0c06399_0002.jpg

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