中国二连浩特分离的三株鼠疫耶尔森氏菌的全基因组组装
Whole-Genome Assemblies for Three Yersinia pestis Strains Isolated in Erenhot, China.
作者信息
Wang Jing, Yang Xifeng, Zheng Hongyuan, Tian Li, Shi Qi, Wu Jing, Cui Yujun, Song Yajun, Guo Wenxiu, Yun Tuoya, Yun Hua, Jin Muzi, Chen Yufei, Zhang Sheng, Wei Huaibo
机构信息
Chinese Academy of Inspection and Quarantine (CAIQ), Beijing, China.
Huhehaote Customs District P.R. China, Hohhot, China.
出版信息
Microbiol Resour Announc. 2020 Nov 5;9(45):e01084-20. doi: 10.1128/MRA.01084-20.
Abstract
To explore the genetic diversity of strains in Erenhot, China, and their relationship with Mongolian strains, we collected and sequenced three strains from Erenhot, China, in 2018. Here, we report the draft genome sequences of three bv. Medievalis strains belonging to the 2.MED phylogroup that were circulating in populations.
摘要
为探究中国二连浩特地区菌株的遗传多样性及其与蒙古菌株的关系，我们于2018年从中国二连浩特采集了三株菌株并进行测序。在此，我们报告了在人群中传播的属于2.MED系统发育组的三株中世纪生物变种菌株的基因组草图序列。
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本文引用的文献
1
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago.5000年前欧亚大陆上鼠疫耶尔森氏菌的早期分化菌株。
Cell. 2015 Oct 22;163(3):571-82. doi: 10.1016/j.cell.2015.10.009.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.鼠疫耶尔森菌流行性病原体的突变率的历史变化。
Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82. doi: 10.1073/pnas.1205750110. Epub 2012 Dec 27.
6
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
7
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.通过成簇规律间隔短回文重复序列洞察鼠疫耶尔森菌的微观进化。
PLoS One. 2008 Jul 9;3(7):e2652. doi: 10.1371/journal.pone.0002652.
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