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构建一个新的肿瘤免疫相关特征,以评估和分类卵巢癌的预后风险。

Construction of a new tumor immunity-related signature to assess and classify the prognostic risk of ovarian cancer.

机构信息

Obstetrics and Gynecology, The First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang, Jiangxi, China.

出版信息

Aging (Albany NY). 2020 Nov 8;12(21):21316-21328. doi: 10.18632/aging.103868.

Abstract

Ovarian cancer is associated with a high mortality rate. In this study, we established a new immune-related signature that can stratify ovarian cancer patients. First, we obtained immune-related genes through IMMUPORT, and DEGs (Differential Expression Genes) by analyzing the GSE26712 dataset. The APP (Antigen Processing and Presentation) and DEG signatures were established using univariate and multivariate Cox models. Kaplan-Meier analysis revealed the signatures' prognostic value in training and validation cohorts (HR: 0.379 VS. 0.450; 0.333 VS. 0.327). Nomogram analysis was used to assess the signatures' ability to predict the 30-month prognosis, which was evaluated using the calibration curve and time-dependent ROC curve (30-month AUC: 0.665 VS. 0.743). Time-dependent ROC, Decision Curve Analysis (DCA) and Integrated discrimination improvement (IDI) was used to compare the new model to previously published gene signatures. 30-month AUC composite variable (0.736) was higher than 9-gene signature (0.657), and composite variable had a larger net benefit and a higher IDI (+2.436%) relative to the 9-gene signature. Tumor immune infiltration and tumor microenvironment scores of the 2 groups separated by APP signature were compared. GSEA was used to identify enriched KEGG pathways. Conclusively, the proposed signature can stratify ovarian cancer patients by risk-score and guide clinical decisions.

摘要

卵巢癌死亡率较高。本研究建立了一种新的免疫相关特征,可对卵巢癌患者进行分层。首先,我们通过 IMMUPORT 获得免疫相关基因,并通过分析 GSE26712 数据集获得差异表达基因(DEGs)。使用单变量和多变量 Cox 模型建立 APP(抗原加工和呈递)和 DEG 特征。Kaplan-Meier 分析显示特征在训练和验证队列中的预后价值(HR:0.379 VS. 0.450;0.333 VS. 0.327)。列线图分析用于评估特征预测 30 个月预后的能力,通过校准曲线和时间依赖性 ROC 曲线进行评估(30 个月 AUC:0.665 VS. 0.743)。时间依赖性 ROC、决策曲线分析(DCA)和综合判别改善(IDI)用于比较新模型与之前发表的基因特征。30 个月 AUC 复合变量(0.736)高于 9 基因特征(0.657),复合变量与 9 基因特征相比,净收益更大,IDI 更高(+2.436%)。比较 APP 特征分层的两组肿瘤免疫浸润和肿瘤微环境评分。GSEA 用于识别富集的 KEGG 通路。综上所述,该特征可通过风险评分对卵巢癌患者进行分层,并指导临床决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd11/7695433/d2c6f97ead87/aging-12-103868-g001.jpg

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