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两种新型基因组DNA序列作为检测[具体疾病名称1]和[具体疾病名称2]的常见诊断靶点:定量聚合酶链反应检测方法的开发及临床评估

Two novel genomic DNA sequences as common diagnostic targets to detect and : Development of quantitative polymerase chain reaction assays, and clinical evaluation.

作者信息

Shrivastava Arpit Kumar, Panda Swagatika, Kumar Subrat, Sahu Priyadarshi Soumyaranjan

机构信息

Infection Biology Laboratory, School of Biotechnology, KIIT Deemed to be University, Bhubaneswar, Odisha; Department of Microbiology, Virus Research and Diagnostic Laboratory, Atal Bihari Vajpayee Government Medical College, Vidisha, Madhya Pradesh, India.

Infection Biology Laboratory, School of Biotechnology, KIIT Deemed to be University; Department of Infectious Disease Biology, Institute of Life Sciences, Bhubaneswar, Odisha, India.

出版信息

Indian J Med Microbiol. 2020 Jul-Dec;38(3 & 4):430-439. doi: 10.4103/ijmm.IJMM_20_114.

Abstract

INTRODUCTION

Cryptosporidium is an intestinal parasite responsible for gastroenteritis. Conventional diagnosis of Cryptosporidium is made by microscopy. The most frequent molecular detection method for this parasite is polymerase chain reaction (PCR). The objective of the present study was to identify the novel DNA targets and development of PCR-based assays for the specific detection of two major human infecting species Cryptosporidium parvum and Cryptosporidium hominis.

METHODOLOGY

Sensitive and specific SYBR green quantitative PCR (qPCR) and TaqMan qPCR assays were developed and validated at both diagnostic and analytical level using the new identified targets TU502HP-1 and TU502HP-2.

RESULTS

Assay validation results showed that the newly developed real-time PCR assays are 100% specific with a reliable limit of detection. Overall repeatability and reproducibility of these assays showed good quality results over intra- and inter-laboratory analysis.

CONCLUSION

Novel target-based qPCR assays can be rapid an efficient tool for simultaneous detection of a C. parvum and C. hominis. These genes could also be utilized for the development of innovative DNA-based Point-of-Care test development.

摘要

引言

隐孢子虫是一种导致肠胃炎的肠道寄生虫。隐孢子虫的传统诊断方法是显微镜检查。针对这种寄生虫最常用的分子检测方法是聚合酶链反应(PCR)。本研究的目的是鉴定新的DNA靶点,并开发基于PCR的检测方法,用于特异性检测两种主要感染人类的隐孢子虫物种——微小隐孢子虫和人隐孢子虫。

方法

使用新鉴定的靶点TU502HP-1和TU502HP-2,在诊断和分析水平上开发并验证了灵敏且特异的SYBR Green定量PCR(qPCR)和TaqMan qPCR检测方法。

结果

检测方法验证结果表明,新开发的实时PCR检测方法具有100%的特异性和可靠的检测限。这些检测方法在实验室内和实验室间分析中的总体重复性和再现性显示出良好的质量结果。

结论

基于新靶点的qPCR检测方法可以成为同时检测微小隐孢子虫和人隐孢子虫的快速有效工具。这些基因也可用于开发创新的基于DNA的即时检测方法。

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