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溶剂工程研究在重组酶聚合酶扩增中的应用。

Solvent engineering studies on recombinase polymerase amplification.

机构信息

Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

Departament d'Enginyeria Química, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Spain; ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain.

出版信息

J Biosci Bioeng. 2021 Feb;131(2):219-224. doi: 10.1016/j.jbiosc.2020.10.001. Epub 2020 Nov 8.

Abstract

Recombinase polymerase amplification (RPA) is a technique that is used to specifically amplify a target nucleic acid sequence. Unlike the polymerase chain reaction (PCR), RPA is performed at a constant temperature between 37 and 42°C. Therefore, it can be potentially used for the onsite detection of various pathogens when combined with DNA extraction and amplicon detection techniques. In this study, we prepared recombinant recombinase and single-stranded DNA-binding protein from T4 phage and used them to examine the effects of reaction conditions and additives on the efficiency of RPA. The results revealed that the optimal pH was 7.5-8.0, optimal potassium acetate concentration was 40-80 mM, and optimal reaction temperature was 37-45°C although dimethyl sulfoxide at 5% v/v and formamide at 5% v/v inhibited the reaction. Our results suggest that RPA could be conducted using a wider range of optimal reaction conditions than those required for PCR and that RPA is highly suitable for point-of-care use.

摘要

重组酶聚合酶扩增(RPA)是一种用于特异性扩增靶核酸序列的技术。与聚合酶链式反应(PCR)不同,RPA 在 37 至 42°C 的恒定温度下进行。因此,当与 DNA 提取和扩增子检测技术结合使用时,它可以潜在地用于现场检测各种病原体。在这项研究中,我们从 T4 噬菌体中制备了重组酶和单链 DNA 结合蛋白,并使用它们来检查反应条件和添加剂对 RPA 效率的影响。结果表明,最佳 pH 值为 7.5-8.0,最佳乙酸钾浓度为 40-80 mM,最佳反应温度为 37-45°C,尽管 5%v/v 的二甲基亚砜和 5%v/v 的甲酰胺会抑制反应。我们的结果表明,RPA 可以在比 PCR 所需的更宽的最佳反应条件下进行,并且 RPA 非常适合即时护理使用。

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