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一种基于外切酶探针的重组酶聚合酶扩增检测法用于快速检测猪细小病毒。

An exo probe-based recombinase polymerase amplification assay for the rapid detection of porcine parvovirus.

作者信息

Wang Jian-Chang, Liu Li-Bing, Han Qing-An, Wang Jin-Feng, Yuan Wan-Zhe

机构信息

Center of Inspection and Quarantine, Hebei Entry-Exit Inspection and Quarantine Bureau, Shijiazhuang 050051, China.

Hebei Animal Disease Control Center, Shijiazhuang 050050, China.

出版信息

J Virol Methods. 2017 Oct;248:145-147. doi: 10.1016/j.jviromet.2017.06.011. Epub 2017 Jul 6.

DOI:10.1016/j.jviromet.2017.06.011
PMID:28690087
Abstract

Recombinase polymerase amplification (RPA), an isothermal amplification technology, has been developed as an alternative to PCR in pathogen detection. A real-time RPA assay (rt-RPA) was developed to detect the porcine parvovirus (PPV) using primers and exo probe specific for the VP2 gene. The amplification was performed at 39°C for 20min. There was no cross-reaction with other pathogens tested. Using the recombinant plasmid pPPV-VP2 as template, the analytical sensitivity was 103 copies. The assay performance was evaluated by testing 115 field samples by rt-RPA and a real-time PCR assay. The diagnostic agreement between assays was 100%, and PPV DNA was detected in 94 samples. The R value of rt-RPA and real-time PCR was 0.909 by linear regression analysis. The developed rt-RPA assay provides a useful alternative tool for rapid, simple and reliable detection of PPV in diagnostic laboratories and at point-of-care, especially in remote and rural areas.

摘要

重组酶聚合酶扩增(RPA)是一种等温扩增技术,已被开发作为病原体检测中聚合酶链反应(PCR)的替代方法。开发了一种实时RPA检测方法(rt-RPA),使用针对VP2基因的引物和外切核酸酶探针来检测猪细小病毒(PPV)。扩增在39°C下进行20分钟。与所检测的其他病原体没有交叉反应。以重组质粒pPPV-VP2为模板,分析灵敏度为103个拷贝。通过rt-RPA和实时PCR检测115份现场样本评估该检测方法的性能。两种检测方法之间的诊断一致性为100%,在94份样本中检测到PPV DNA。通过线性回归分析,rt-RPA与实时PCR的R值为0.909。所开发的rt-RPA检测方法为诊断实验室和即时检测中快速、简单且可靠地检测PPV提供了一种有用的替代工具,特别是在偏远和农村地区。

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