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通过单糖结合诱导的构象变化刺激β-葡萄糖苷酶的新机制。

A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change.

机构信息

Brazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil.

Department of Biochemistry and Tissue Biology, Institute of Biology (IB), University of Campinas (UNICAMP), Campinas, SP, Brazil; Programa de Processos Tecnológicos e Ambientais, Universidade de Sorocaba (UNISO), Sorocaba, SP, Brazil.

出版信息

Int J Biol Macromol. 2021 Jan 1;166:1188-1196. doi: 10.1016/j.ijbiomac.2020.11.001. Epub 2020 Nov 10.

DOI:10.1016/j.ijbiomac.2020.11.001
PMID:33181222
Abstract

It is urgent the transition from a fossil fuel-based economy to a sustainable bioeconomy based on bioconversion technologies using renewable plant biomass feedstocks to produce high chemicals, bioplastics, and biofuels. β-Glucosidases are key enzymes responsible for degrading the plant cell wall polymers, as they cleave glucan-based oligo- and polysaccharides to generate glucose. Monosaccharide-tolerant or -stimulated β-glucosidases have been reported in the past decade. Here, we describe a novel mechanism of β-glucosidase stimulation by glucose and xylose. The glycoside hydrolase 1 family β-glucosidase from Thermotoga petrophila (TpBgl1) displays a typical glucose stimulation mechanism based on an increased V and decreased K in response to glucose. Through molecular docking and dynamics analyses, we mapped putative monosaccharide binding regions (BRs) on the surface of TpBgl1. Our results indicate that after interaction with glucose or xylose at BR1 site, an adjacent loop region assumes an extended conformation, which increases the entrance to the TpBgl1 active site, improving product formation. Biochemical assays with TpBgl1 BR1 mutants, TpBgl1 and TpBgl1, resulted in decreasing and abolishing monosaccharide stimulation, respectively. These mutations also impaired the BR1 looping extension responsible for monosaccharide stimulation. This study provides a molecular basis for the rational design of β-glucosidases for biotechnological applications.

摘要

从基于化石燃料的经济向基于生物转化技术的可持续生物经济转型迫在眉睫,该技术利用可再生植物生物质原料生产高价值化学品、生物塑料和生物燃料。β-葡萄糖苷酶是负责降解植物细胞壁聚合物的关键酶,因为它们可以将基于葡聚糖的低聚糖和多糖切割生成葡萄糖。过去十年中已经报道了耐单糖或受单糖刺激的β-葡萄糖苷酶。在这里,我们描述了一种由葡萄糖和木糖刺激β-葡萄糖苷酶的新机制。来自嗜热栖热菌(Thermotoga petrophila)的糖苷水解酶 1 家族β-葡萄糖苷酶(TpBgl1)显示出基于葡萄糖的典型刺激机制,表现为 V 增加和 K 降低。通过分子对接和动力学分析,我们在 TpBgl1 表面绘制了可能的单糖结合区域(BR)。我们的结果表明,在 BR1 位点与葡萄糖或木糖相互作用后,相邻的环区呈现延伸构象,从而增加了 TpBgl1 活性位点的入口,提高了产物形成。TpBgl1 BR1 突变体、TpBgl1 和 TpBgl1 的生化分析导致单糖刺激分别降低和消除。这些突变还损害了负责单糖刺激的 BR1 环延伸。这项研究为生物技术应用中β-葡萄糖苷酶的合理设计提供了分子基础。

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