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利用机器学习技术进行非靶向筛查以鉴定合成阿片类药物中的化合物

Towards compound identification of synthetic opioids in nontargeted screening using machine learning techniques.

作者信息

Klingberg Joshua, Cawley Adam, Shimmon Ronald, Fu Shanlin

机构信息

Centre for Forensic Science, University of Technology Sydney, Ultimo, New South Wales, Australia.

Racing NSW, Australian Racing Forensic Laboratory, Sydney, New South Wales, Australia.

出版信息

Drug Test Anal. 2021 May;13(5):990-1000. doi: 10.1002/dta.2976. Epub 2020 Dec 9.

Abstract

The constant evolution of the illicit drug market makes the identification of unknown compounds problematic. Obtaining certified reference materials for a broad array of new analogues can be difficult and cost prohibitive. Machine learning provides a promising avenue to putatively identify a compound before confirmation against a standard. In this study, machine learning approaches were used to develop class prediction and retention time prediction models. The developed class prediction model used a naïve Bayes architecture to classify opioids as belonging to either the fentanyl analogues, AH series or U series, with an accuracy of 89.5%. The model was most accurate for the fentanyl analogues, most likely due to their greater number in the training data. This classification model can provide guidance to an analyst when determining a suspected structure. A retention time prediction model was also trained for a wide array of synthetic opioids. This model utilised Gaussian process regression to predict the retention time of analytes based on multiple generated molecular features with 79.7% of the samples predicted within ±0.1 min of their experimental retention time. Once the suspected structure of an unknown compound is determined, molecular features can be generated and input for the prediction model to compare with experimental retention time. The incorporation of machine learning prediction models into a compound identification workflow can assist putative identifications with greater confidence and ultimately save time and money in the purchase and/or production of superfluous certified reference materials.

摘要

非法药物市场的不断演变使得鉴定未知化合物成为一个难题。获取大量新型类似物的标准参考物质可能既困难又成本高昂。机器学习为在对照标准进行确认之前推定鉴定化合物提供了一条有前景的途径。在本研究中,使用机器学习方法开发了类别预测和保留时间预测模型。所开发的类别预测模型采用朴素贝叶斯架构将阿片类药物分类为属于芬太尼类似物、AH系列或U系列,准确率为89.5%。该模型对芬太尼类似物的分类最为准确,很可能是因为它们在训练数据中的数量更多。这种分类模型在分析师确定可疑结构时可以提供指导。还针对多种合成阿片类药物训练了保留时间预测模型。该模型利用高斯过程回归基于多个生成的分子特征预测分析物的保留时间,79.7%的样品预测保留时间在其实验保留时间的±0.1分钟内。一旦确定了未知化合物的可疑结构,就可以生成分子特征并输入预测模型,以与实验保留时间进行比较。将机器学习预测模型纳入化合物鉴定工作流程可以更有信心地协助推定鉴定,并最终在购买和/或生产多余的标准参考物质时节省时间和金钱。

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