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-{3-[(4-甲氧基苯基)氨基甲酰基]苯基}-3-硝基苯甲酰胺作为有前景的人因子Xa抑制剂的合成、晶体结构、 Hirshfeld表面分析、分子静电势研究及分子对接

Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol-ecular docking of -{3-[(4-meth-oxy-phen-yl)carbamo-yl]phen-yl}-3-nitro-benzamide as a promising inhibitor of hfXa.

作者信息

Moreno-Fuquen Rodolfo, Hurtado-Angulo Mario, Arango-Daraviña Kevin, Bain Gavin, Kennedy Alan R

机构信息

Grupo de Cristalografía, Departamento de Química, Universidad del Valle, A.A 25360 Santiago de Cali, Colombia.

WestCHEM. Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1XL, Scotland.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Oct 20;76(Pt 11):1762-1767. doi: 10.1107/S2056989020013730. eCollection 2020 Nov 1.

DOI:10.1107/S2056989020013730
PMID:33209349
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7643242/
Abstract

The title compound, CHNO, consists of three rings, , and , linked by amide bonds with the benzene rings and being inclined to the mean plane of the central benzene ring by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, mol-ecules are linked N-H⋯O and C-H⋯O hydrogen bonds, forming fused (18), (30), (38) rings running along [0] and (37) and (15) rings along [001]. Hirshfeld analysis was undertaken to study the inter-molecular contacts in the crystal, showing that the most significant contacts are H⋯O/O⋯H (30.5%), H⋯C/C⋯H (28.2%) and H⋯H (29.0%). Two zones with positive (50.98 and 42.92 kcal mol) potentials and two zones with negative (-42.22 and -34.63 kcal mol) potentials promote the N-H⋯O inter-actions in the crystal. An evaluation of the mol-ecular coupling of the title compound and the protein with enzymatic properties known as human coagulation factor Xa (hfXa) showed the potential for coupling in three arrangements with a similar minimum binding energy, which differs by approximately 3 kcal mol from the value for the mol-ecule Apixaban, which was used as a positive control inhibitor. This suggests the title compound exhibits inhibitory activity.

摘要

标题化合物CHNO由三个环、和通过酰胺键相连,苯环和相对于中心苯环的平均平面分别倾斜2.99 (18)°和4.57 (18)°。在晶体中,分子通过N-H⋯O和C-H⋯O氢键相连,形成沿[0]方向延伸的稠合(18)、(30)、(38)环以及沿[001]方向的(37)和(15)环。进行了 Hirshfeld 分析以研究晶体中的分子间相互作用,结果表明最显著的相互作用是H⋯O/O⋯H (30.5%)、H⋯C/C⋯H (28.2%) 和H⋯H (29.0%)。两个具有正电势(50.98和42.92 kcal mol)的区域和两个具有负电势(-42.22和-34.63 kcal mol)的区域促进了晶体中的N-H⋯O相互作用。对标题化合物与具有人类凝血因子Xa (hfXa)酶活性的蛋白质的分子偶联评估表明,在三种排列方式下具有偶联潜力,其最小结合能相似,与用作阳性对照抑制剂的阿哌沙班分子的值相差约3 kcal mol。这表明标题化合物具有抑制活性。

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