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酵母核小体允许DNA进行热解旋。

Yeast nucleosomes allow thermal untwisting of DNA.

作者信息

Morse R H, Pederson D S, Dean A, Simpson R T

机构信息

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD 20892.

出版信息

Nucleic Acids Res. 1987 Dec 23;15(24):10311-30. doi: 10.1093/nar/15.24.10311.

DOI:10.1093/nar/15.24.10311
PMID:3320966
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC339946/
Abstract

Thermal untwisting of DNA is suppressed in vitro in nucleosomes formed with chicken or monkey histones. In contrast, results obtained for the 2 micron plasmid in Saccharomyces cerevisiae are consistent with only 30% of the DNA being constrained from thermal untwisting in vivo. In this paper, we examine thermal untwisting of several plasmids in yeast cells, nuclei, and nuclear extracts. All show the same quantitative degree of thermal untwisting, indicating that this phenomenon is independent of DNA sequence. Highly purified yeast plasmid chromatin also shows a large degree of thermal untwisting, whereas circular chromatin reconstituted using chicken histones is restrained from thermal untwisting in yeast nuclear extracts. Thus, the difference in thermal untwisting between yeast chromatin and that assembled with chicken histones is most likely due to differences in the constituent histone proteins.

摘要

在由鸡或猴组蛋白形成的核小体中,DNA的热解旋在体外受到抑制。相比之下,在酿酒酵母中对2微米质粒的研究结果表明,体内只有30%的DNA热解旋受到限制。在本文中,我们研究了几种质粒在酵母细胞、细胞核和核提取物中的热解旋情况。所有结果都显示出相同程度的热解旋定量,表明这种现象与DNA序列无关。高度纯化的酵母质粒染色质也表现出很大程度的热解旋,而使用鸡组蛋白重构的环状染色质在酵母核提取物中热解旋受到抑制。因此,酵母染色质与鸡组蛋白组装的染色质之间热解旋的差异很可能是由于组成组蛋白的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/db834af1ba49/nar00268-0249-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/8ed4af78a020/nar00268-0243-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/7f6341fdc025/nar00268-0245-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/1d03c6ee0b07/nar00268-0246-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/e832ea5d9f08/nar00268-0247-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/db834af1ba49/nar00268-0249-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/8ed4af78a020/nar00268-0243-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/7f6341fdc025/nar00268-0245-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/1d03c6ee0b07/nar00268-0246-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/e832ea5d9f08/nar00268-0247-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4359/339946/db834af1ba49/nar00268-0249-a.jpg

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1
Yeast nucleosomes allow thermal untwisting of DNA.酵母核小体允许DNA进行热解旋。
Nucleic Acids Res. 1987 Dec 23;15(24):10311-30. doi: 10.1093/nar/15.24.10311.
2
Structural studies on yeast nucleosomes.酵母核小体的结构研究。
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Chromatin assembly on plasmid DNA in vitro. Apparent spreading of nucleosome alignment from one region of pBR327 by histone H5.体外质粒DNA上的染色质组装。组蛋白H5使pBR327一个区域的核小体排列明显扩展。
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Topoisomer heterogeneity of plasmid chromatin in living cells.活细胞中质粒染色质的拓扑异构酶异质性
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Formation of nucleosomes on positively supercoiled DNA.正超螺旋DNA上核小体的形成。
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Yeast plasmids have fewer superhelical turns than predicted by the nucleosome repeat of yeast DNA.酵母质粒的超螺旋圈数比根据酵母DNA核小体重复序列预测的要少。
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Nucleosome core particles suppress the thermal untwisting of core DNA and adjacent linker DNA.核小体核心颗粒抑制核心DNA及相邻连接区DNA的热解旋。
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Chromatin reconstitution on small DNA rings. V. DNA thermal flexibility of single nucleosomes.小DNA环上的染色质重构。V. 单核小体的DNA热柔性
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Isolation of a condensed, intracellular form of the 2-micrometer DNA plasmid of Saccharomyces cerevisiae.酿酒酵母2微米DNA质粒浓缩细胞内形式的分离。
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Histone Modifications, Internucleosome Dynamics, and DNA Stresses: How They Cooperate to "Functionalize" Nucleosomes.组蛋白修饰、核小体间动力学与DNA应激:它们如何协同作用使核小体“功能化”
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On the role of inter-nucleosomal interactions and intrinsic nucleosome dynamics in chromatin function.

本文引用的文献

1
Effect of histone H3 sulfhydryl modifications on histone-histone interactions and nucleosome formation and structure.组蛋白H3巯基修饰对组蛋白-组蛋白相互作用以及核小体形成和结构的影响。
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A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3' border of the region.5S RNA基因中心的一个控制区域指导转录的特异性起始:II. 该区域的3'边界。
Cell. 1980 Jan;19(1):27-35. doi: 10.1016/0092-8674(80)90385-2.
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The path of DNA in the nucleosome.
论核小体间相互作用及内在核小体动力学在染色质功能中的作用
Biochem Biophys Rep. 2016 Feb 16;5:492-501. doi: 10.1016/j.bbrep.2016.02.009. eCollection 2016 Mar.
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Supercoiling in DNA and chromatin.DNA 和染色质中的超螺旋。
Curr Opin Genet Dev. 2014 Apr;25(100):15-21. doi: 10.1016/j.gde.2013.10.013. Epub 2013 Dec 22.
5
A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones.用鸡、蛙和各种酵母核心组蛋白进行体外核小体定位的比较。
J Mol Biol. 2013 Nov 15;425(22):4206-22. doi: 10.1016/j.jmb.2013.07.019. Epub 2013 Jul 18.
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ASF1A and ATM regulate H3K56-mediated cell-cycle checkpoint recovery in response to UV irradiation.ASF1A 和 ATM 调节 H3K56 介导的细胞周期检查点恢复以响应 UV 照射。
Nucleic Acids Res. 2011 Oct;39(18):7931-45. doi: 10.1093/nar/gkr523. Epub 2011 Jul 3.
7
The DNA repair protein yKu80 regulates the function of recombination enhancer during yeast mating type switching.DNA修复蛋白yKu80在酵母交配型转换过程中调节重组增强子的功能。
Mol Cell Biol. 2005 Oct;25(19):8476-85. doi: 10.1128/MCB.25.19.8476-8485.2005.
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Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions.酵母核小体核心颗粒的结构揭示了核小体间相互作用的根本变化。
EMBO J. 2001 Sep 17;20(18):5207-18. doi: 10.1093/emboj/20.18.5207.
9
The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome.被抑制的酵母a细胞特异性基因STE6的有序染色质结构域,每个核小体包含两个共抑制因子Tup1p分子。
EMBO J. 2000 Feb 1;19(3):400-9. doi: 10.1093/emboj/19.3.400.
10
Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication.Gal4p介导的染色质重塑取决于其在核小体中的结合位点位置,但不需要DNA复制。
Mol Cell Biol. 1998 Mar;18(3):1201-12. doi: 10.1128/MCB.18.3.1201.
核小体中DNA的路径。
Cell. 1982 Jul;29(3):724-6. doi: 10.1016/0092-8674(82)90433-0.
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Structural studies on yeast nucleosomes.酵母核小体的结构研究。
Can J Biochem. 1982 Mar;60(3):379-88. doi: 10.1139/o82-045.
5
Characterization of the transmission during cytoductant formation of the 2 micrometers DNA plasmid from Saccharomyces.酿酒酵母2微米DNA质粒在细胞导子形成过程中的传递特性
Mol Gen Genet. 1981;183(1):59-65. doi: 10.1007/BF00270139.
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The primary structure of yeast histone H3.
Eur J Biochem. 1982 Jan;121(3):501-10. doi: 10.1111/j.1432-1033.1982.tb05815.x.
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Structure of the nucleosome core particle at 7 A resolution.7埃分辨率下核小体核心颗粒的结构。
Nature. 1984;311(5986):532-7. doi: 10.1038/311532a0.
8
Yeast may not contain histone H1: the only known 'histone H1-like' protein in Saccharomyces cerevisiae is a mitochondrial protein.酵母可能不含组蛋白H1:酿酒酵母中唯一已知的“类组蛋白H1”蛋白是一种线粒体蛋白。
Nucleic Acids Res. 1984 Nov 12;12(21):7975-85. doi: 10.1093/nar/12.21.7975.
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Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions.环状TRP1ARS1染色质的核酸酶消化显示,定位核小体被核酸酶敏感区域隔开。
J Mol Biol. 1984 Aug 25;177(4):715-33. doi: 10.1016/0022-2836(84)90046-9.
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Genomic sequencing.基因组测序
Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5. doi: 10.1073/pnas.81.7.1991.