Physical Chemistry Unit, Materials Science and Physical Chemistry Department & Research Institute of Theoretical and Computational Chemistry (IQTCUB) of Barcelona University (UB), Barcelona, Catalonia, Spain.
Chemistry Department, Technical School of Agricultural Engineering & AGROTECNIO of Lleida University (UdL), Lleida, Catalonia, Spain.
Soft Matter. 2021 Jan 21;17(3):655-669. doi: 10.1039/d0sm01475c. Epub 2020 Nov 20.
In this work we study the coupling between ionization and conformational properties of two IDPs, histatin-5 and β-amyloid 42, in the presence of neutral and charged crowders. The latter is modeled to resemble bovine serum albumin (BSA). With this aim, semi-grand canonical Monte Carlo simulations are performed, so that the IDP charge is a dynamic property, undergoing protonation/deprotonation processes. Both ionization properties (global and specific amino acid charge and binding capacitance) and radius of gyration are analyzed in a large range of pH values and salt concentrations. Without crowder agents, the titration curve of histatin-5, a polycation, is salt-dependent while that of β-amyloid 42, a polyampholyte, is almost unaffected. The salt concentration is found to be particularly relevant at pH values where the protein binding capacitance (directly linked with charge fluctuation) is larger. Upon addition of neutral crowders, charge regulation is observed in histatin-5, while for β-amyloid 42 this effect is very small. The main mechanism for charge regulation is found to be the effective increase in the ionic strength due to the excluded volume. In the presence of charged crowders, a significant increase in the charge of both IDPs is observed in almost all the pH range. In this case, the IDP charge is altered not only by the increase in the effective ionic strength but also by its direct electrostatic interaction with the charged crowders.
在这项工作中,我们研究了在中性和带电拥挤剂存在下,两种 IDP(组蛋白-5 和 β-淀粉样蛋白 42)的电离和构象性质的耦合。后者被建模为类似于牛血清白蛋白 (BSA)。为此,进行了半广义正则蒙特卡罗模拟,使得 IDP 电荷成为动态特性,经历质子化/去质子化过程。在广泛的 pH 值和盐浓度范围内,分析了全局和特定氨基酸电荷以及回转半径等电离特性(全局和特定氨基酸电荷和结合电容)。在没有拥挤剂的情况下,聚阳离子组蛋白-5 的滴定曲线随盐浓度而变化,而两性电解质 β-淀粉样蛋白 42 的几乎不受影响。发现盐浓度在与电荷波动直接相关的蛋白质结合电容较大的 pH 值处特别相关。添加中性拥挤剂后,在组蛋白-5 中观察到电荷调节,而对于 β-淀粉样蛋白 42,这种效应非常小。电荷调节的主要机制被发现是由于排除体积导致的有效离子强度增加。在存在带电拥挤剂的情况下,在几乎所有 pH 范围内都观察到两种 IDP 的电荷显著增加。在这种情况下,IDP 电荷不仅由于有效离子强度的增加而改变,而且还由于其与带电拥挤剂的直接静电相互作用而改变。