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内分泌干扰化学物质与 COVID-19 之间的关系:一种计算系统生物学方法。

Endocrine disrupting chemicals and COVID-19 relationships: A computational systems biology approach.

机构信息

Université de Paris, T3S, Inserm UMR S-1124, F-75006 Paris, France.

Harvard T.H.Chan School of Public Health, Boston, MA 02115, USA; University of Southern Denmark, 5000 Odense C, Denmark.

出版信息

Environ Int. 2021 Dec;157:106232. doi: 10.1016/j.envint.2020.106232. Epub 2020 Oct 30.

Abstract

BACKGROUND

Patients at high risk of severe forms of COVID-19 frequently suffer from chronic diseases, but other risk factors may also play a role. Environmental stressors, such as endocrine disrupting chemicals (EDCs), can contribute to certain chronic diseases and might aggravate the course of COVID-19.

OBJECTIVES

To explore putative links between EDCs and COVID-19 severity, an integrative systems biology approach was constructed and applied.

METHODS

As a first step, relevant data sets were compiled from major data sources. Biological associations of major EDCs to proteins were extracted from the CompTox database. Associations between proteins and diseases known as important COVID-19 comorbidities were obtained from the GeneCards and DisGeNET databases. Based on these data, we developed a tripartite network (EDCs-proteins-diseases) and used it to identify proteins overlapping between the EDCs and the diseases. Signaling pathways for common proteins were then investigated by over-representation analysis.

RESULTS

We found several statistically significant pathways that may be dysregulated by EDCs and that may also be involved in COVID-19 severity. The Th17 and the AGE/RAGE signaling pathways were particularly promising.

CONCLUSIONS

Pathways were identified as possible targets of EDCs and as contributors to COVID-19 severity, thereby highlighting possible links between exposure to environmental chemicals and disease development. This study also documents the application of computational systems biology methods as a relevant approach to increase the understanding of molecular mechanisms linking EDCs and human diseases, thereby contributing to toxicology prediction.

摘要

背景

患有 COVID-19 严重形式的高风险患者常患有慢性病,但其他风险因素也可能起作用。环境应激物,如内分泌干扰化学物质 (EDCs),可能导致某些慢性疾病,并可能加重 COVID-19 的病程。

目的

为了探索 EDCs 与 COVID-19 严重程度之间的潜在联系,构建并应用了一种综合系统生物学方法。

方法

作为第一步,从主要数据源中编译了相关数据集。从 CompTox 数据库中提取了主要 EDCs 与蛋白质的生物学关联。从 GeneCards 和 DisGeNET 数据库中获得了与 COVID-19 重要合并症相关的蛋白质的关联。基于这些数据,我们开发了一个三方网络(EDCs-蛋白质-疾病),并使用它来识别 EDCs 和疾病之间重叠的蛋白质。然后通过过度表示分析研究常见蛋白质的信号通路。

结果

我们发现了几个可能受到 EDCs 调节且可能与 COVID-19 严重程度相关的统计学上显著的信号通路。Th17 和 AGE/RAGE 信号通路尤其有希望。

结论

确定了可能作为 EDCs 靶点的途径,以及可能导致 COVID-19 严重程度的途径,从而强调了暴露于环境化学物质与疾病发展之间的可能联系。本研究还记录了计算系统生物学方法的应用,作为增加对 EDCs 与人类疾病之间分子机制联系的理解的相关方法,从而有助于毒物学预测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7808/7831776/0b9a22df61e4/ga1_lrg.jpg

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