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噬菌体P1位点特异性重组系统cin所需的两种蛋白质FIS和Cin的纯化及其DNA结合特性

Purification and DNA-binding properties of FIS and Cin, two proteins required for the bacteriophage P1 site-specific recombination system, cin.

作者信息

Haffter P, Bickle T A

机构信息

Department of Microbiology, University of Basel, Switzerland.

出版信息

J Mol Biol. 1987 Dec 20;198(4):579-87. doi: 10.1016/0022-2836(87)90201-4.

DOI:10.1016/0022-2836(87)90201-4
PMID:3323534
Abstract

An Escherichia coli chromosomally coded factor termed FIS (Factor for Inversion Stimulation) stimulates the Cin protein-mediated, site-specific DNA inversion system of bacteriophage P1 more than 500-fold. We have purified FIS and the recombinase Cin, and studied the inversion reaction in vitro. DNA footprinting studies with DNase I showed that Cin specifically binds to the recombination site, called cix. FIS does not bind to cix sites but does bind to a recombinational enhancer sequence that is required in cis for efficient recombination. FIS also binds specifically to sequences outside the enhancer, as well as to sequences unrelated to Cin inversion. On the basis of these data, we discuss the possibility of additional functions for FIS in E. coli.

摘要

一种由大肠杆菌染色体编码的名为FIS(反转刺激因子)的因子,能将噬菌体P1的Cin蛋白介导的位点特异性DNA反转系统刺激500多倍。我们已经纯化了FIS和重组酶Cin,并在体外研究了反转反应。用DNase I进行的DNA足迹研究表明,Cin特异性结合到称为cix的重组位点。FIS不结合cix位点,但确实结合到顺式作用的高效重组所需的重组增强子序列。FIS还特异性结合增强子以外的序列,以及与Cin反转无关的序列。基于这些数据,我们讨论了FIS在大肠杆菌中具有其他功能的可能性。

相似文献

1
Purification and DNA-binding properties of FIS and Cin, two proteins required for the bacteriophage P1 site-specific recombination system, cin.噬菌体P1位点特异性重组系统cin所需的两种蛋白质FIS和Cin的纯化及其DNA结合特性
J Mol Biol. 1987 Dec 20;198(4):579-87. doi: 10.1016/0022-2836(87)90201-4.
2
The recombinational enhancer for DNA inversion functions independent of its orientation as a consequence of dyad symmetry in the Fis-DNA complex.DNA 倒位的重组增强子由于 Fis-DNA 复合物中的二元对称性而独立于其方向发挥作用。
Nucleic Acids Res. 1989 Aug 11;17(15):6043-53. doi: 10.1093/nar/17.15.6043.
3
Bent DNA is needed for recombinational enhancer activity in the site-specific recombination system Cin of bacteriophage P1. The role of FIS protein.弯曲的DNA对于噬菌体P1位点特异性重组系统Cin中的重组增强子活性是必需的。FIS蛋白的作用。
J Mol Biol. 1989 Feb 5;205(3):493-500. doi: 10.1016/0022-2836(89)90220-9.
4
Stimulation of DNA inversion by FIS: evidence for enhancer-independent contacts with the Gin-gix complex.FIS对DNA倒位的刺激作用:与Gin-gix复合物形成不依赖增强子的接触的证据。
Nucleic Acids Res. 1997 Oct 1;25(19):3832-9. doi: 10.1093/nar/25.19.3832.
5
Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage Mu.噬菌体 Mu 中 G 片段倒位所需的大肠杆菌宿主因子的纯化及特性
J Biol Chem. 1986 Nov 25;261(33):15673-8.
6
The Escherichia coli protein, Fis: specific binding to the ends of phage Mu DNA and modulation of phage growth.大肠杆菌蛋白Fis:与噬菌体Mu DNA末端的特异性结合及对噬菌体生长的调节
Mol Microbiol. 1989 Apr;3(4):459-68. doi: 10.1111/j.1365-2958.1989.tb00192.x.
7
Expression of the bacteriophage P1 cin recombinase gene from its own and heterologous promoters.噬菌体P1 cin重组酶基因在其自身启动子和异源启动子驱动下的表达
Gene. 1985;34(1):63-72. doi: 10.1016/0378-1119(85)90295-1.
8
Location, degree, and direction of DNA bending associated with the Hin recombinational enhancer sequence and Fis-enhancer complex.与Hin重组增强子序列和Fis-增强子复合物相关的DNA弯曲的位置、程度和方向。
J Bacteriol. 1997 Aug;179(15):4747-53. doi: 10.1128/jb.179.15.4747-4753.1997.
9
The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.野生型和突变型Fis蛋白的分子结构:突变变化与重组增强子功能或DNA结合之间的关系。
Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9558-62. doi: 10.1073/pnas.88.21.9558.
10
Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022.Xis和Fis蛋白可阻止噬菌体HK022溶原菌中位点特异性DNA倒位。
J Bacteriol. 1993 Feb;175(3):693-700. doi: 10.1128/jb.175.3.693-700.1993.

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Virology. 2020 Mar;542:1-7. doi: 10.1016/j.virol.2019.12.012. Epub 2020 Jan 7.
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Site-specific DNA Inversion by Serine Recombinases.丝氨酸重组酶介导的位点特异性DNA倒位
Microbiol Spectr. 2015 Feb 19;3(3):1-36. doi: 10.1128/microbiolspec.MDNA3-0047-2014.
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The role of the local environment of engineered Tyr to Trp substitutions for probing the denaturation mechanism of FIS.工程化 Tyr 到 Trp 取代对 FIS 变性机制探测的局部环境的作用。
Protein Sci. 2011 Feb;20(2):302-12. doi: 10.1002/pro.561.
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Biochemical identification of base and phosphate contacts between Fis and a high-affinity DNA binding site.Fis与高亲和力DNA结合位点之间碱基和磷酸接触的生化鉴定。
J Mol Biol. 2008 Jul 4;380(2):327-39. doi: 10.1016/j.jmb.2008.04.075. Epub 2008 May 7.
5
Common and variable contributions of Fis residues to high-affinity binding at different DNA sequences.Fis残基对不同DNA序列高亲和力结合的共同和可变贡献。
J Bacteriol. 2006 Mar;188(6):2081-95. doi: 10.1128/JB.188.6.2081-2095.2006.
6
Genome of bacteriophage P1.噬菌体P1的基因组。
J Bacteriol. 2004 Nov;186(21):7032-68. doi: 10.1128/JB.186.21.7032-7068.2004.
7
Equilibrium denaturation studies of the Escherichia coli factor for inversion stimulation: implications for in vivo function.大肠杆菌倒位刺激因子的平衡变性研究:对体内功能的启示
Protein Sci. 2002 Jul;11(7):1671-80. doi: 10.1110/ps.5050102.
8
Functional determinants of the Escherichia coli fis promoter: roles of -35, -10, and transcription initiation regions in the response to stringent control and growth phase-dependent regulation.大肠杆菌fis启动子的功能决定因素:-35、-10和转录起始区域在严格控制和生长阶段依赖性调控反应中的作用。
J Bacteriol. 1999 Feb;181(4):1269-80. doi: 10.1128/JB.181.4.1269-1280.1999.
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Information analysis of Fis binding sites.Fis结合位点的信息分析
Nucleic Acids Res. 1997 Dec 15;25(24):4994-5002. doi: 10.1093/nar/25.24.4994.
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Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis.大肠杆菌中 fis 启动子区域的缺失分析:整合宿主因子与 Fis 的拮抗作用
J Bacteriol. 1997 Oct;179(20):6367-77. doi: 10.1128/jb.179.20.6367-6377.1997.