Department of Environmental Conservation, University of Massachusetts, 160 Holdsworth Way, Amherst, Massachusetts, 01003, USA.
Organismic and Evolutionary Biology Graduate Program, University of Massachusetts, 204C French Hall, 230 Stockbridge Road, Amherst, Massachusetts, USA.
Ecology. 2021 Mar;102(3):e03262. doi: 10.1002/ecy.3262. Epub 2021 Feb 2.
Spatial capture-recapture (SCR) has emerged as the industry standard for estimating population density by leveraging information from spatial locations of repeat encounters of individuals. The precision of density estimates depends fundamentally on the number and spatial configuration of traps. Despite this knowledge, existing sampling design recommendations are heuristic and their performance remains untested for most practical applications. To address this issue, we propose a genetic algorithm that minimizes any sensible, criteria-based objective function to produce near-optimal sampling designs. To motivate the idea of optimality, we compare the performance of designs optimized using three model-based criteria related to the probability of capture. We use simulation to show that these designs outperform those based on existing recommendations in terms of bias, precision, and accuracy in the estimation of population size. Our approach, available as a function in the R package oSCR, allows conservation practitioners and researchers to generate customized and improved sampling designs for wildlife monitoring.
空间捕获-再捕获 (SCR) 通过利用个体重复出现的空间位置信息,已经成为估计种群密度的行业标准。密度估计的精度从根本上取决于陷阱的数量和空间配置。尽管有了这些知识,现有的抽样设计建议仍然是启发式的,并且它们在大多数实际应用中的性能仍然未经测试。为了解决这个问题,我们提出了一种遗传算法,该算法可以最小化任何合理的基于标准的目标函数,以生成近乎最优的抽样设计。为了说明最优性的概念,我们比较了使用与捕获概率相关的三个基于模型的标准优化设计的性能。我们使用模拟表明,与基于现有建议的设计相比,这些设计在种群数量估计的偏差、精度和准确性方面表现更好。我们的方法,可作为 R 包 oSCR 中的一个函数使用,允许保护工作者和研究人员为野生动物监测生成定制和改进的抽样设计。