Suppr超能文献

碳原子发声:C 化学位移的几何敏感性如何导致对 Cph1 和 AnPixJ 中藻蓝胆素颜色调谐的理解。

Carbon Atoms Speaking Out: How the Geometric Sensitivity of C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ.

机构信息

Institut für Chemie, Naturwissenschaftliche Fakultät II, Martin-Luther-Universität Halle-Wittenberg, von-Danckelmann-Platz 4, 06120 Halle (Saale), Germany.

出版信息

Molecules. 2020 Nov 24;25(23):5505. doi: 10.3390/molecules25235505.

Abstract

We present a combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics-statistical approach for the interpretation of nuclear magnetic resonance (NMR) chemical shift patterns in phycocyanobilin (PCB). These were originally associated with colour tuning upon photoproduct formation in red/green-absorbing cyanobacteriochrome AnPixJg2 and red/far-red-absorbing phytochrome Cph1Δ2. We pursue an indirect approach without computation of the absorption frequencies since the molecular geometry of cofactor and protein are not accurately known. Instead, we resort to a heuristic determination of the conjugation length in PCB through the experimental NMR chemical shift patterns, supported by quantum chemical calculations. We have found a characteristic correlation pattern of 13C chemical shifts to specific bond orders within the π-conjugated system, which rests on the relative position of carbon atoms with respect to electron-withdrawing groups and the polarisation of covalent bonds. We propose the inversion of this regioselective relationship using multivariate statistics and to apply it to the known experimental NMR chemical shifts in order to predict changes in the bond alternation pattern. Therefrom the extent of electronic conjugation, and eventually the change in absorption frequency, can be derived. In the process, the consultation of explicit mesomeric formulae plays an important role to qualitatively account for possible conjugation scenarios of the chromophore. While we are able to consistently associate the NMR chemical shifts with hypsochromic and bathochromic shifts in the Pg and Pfr, our approach represents an alternative method to increase the explanatory power of NMR spectroscopic data in proteins.

摘要

我们提出了一种组合量子力学/分子力学(QM/MM)分子动力学-统计方法,用于解释藻蓝胆素(PCB)中核磁共振(NMR)化学位移模式。这些最初与红/绿吸收的藻蓝胆素 AnPixJg2 和红/远红吸收的光敏色素 Cph1Δ2 光产物形成时的颜色调谐有关。我们采用了一种间接方法,不计算吸收频率,因为辅因子和蛋白质的分子几何形状不太准确。相反,我们通过实验 NMR 化学位移模式,辅以量子化学计算,启发式地确定 PCB 中的共轭长度。我们发现了一种特征性的 13C 化学位移与π共轭体系中特定键序的相关模式,这种模式基于碳原子相对于吸电子基团的位置和共价键的极化。我们提出使用多元统计来反转这种区域选择性关系,并将其应用于已知的实验 NMR 化学位移,以预测键交替模式的变化。由此可以得出电子共轭的程度,最终得出吸收频率的变化。在这个过程中,咨询明确的离域公式对于定性解释发色团可能的共轭情况起着重要作用。虽然我们能够一致地将 NMR 化学位移与 Pg 和 Pfr 中的蓝移和红移相关联,但我们的方法代表了一种增加蛋白质中 NMR 光谱数据解释能力的替代方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57d3/7727823/ba3af71c9113/molecules-25-05505-g0A1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验