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系统鉴定胃癌的关键功能模块和基因。

Systematic Identification of Key Functional Modules and Genes in Gastric Cancer.

机构信息

Department of Digestive Endoscopy, The First Affiliated Hospital of Nanjing Medical University, 300 Guangzhou Road, 210029 Nanjing, Jiangsu, China.

Department of Cardiology, The First Affiliated Hospital of Nanjing Medical University, 300 Guangzhou Road, 210029 Nanjing, Jiangsu, China.

出版信息

Biomed Res Int. 2020 Nov 16;2020:8853348. doi: 10.1155/2020/8853348. eCollection 2020.

Abstract

Gastric cancer (GC) is associated with high incidence and mortality rates worldwide. Differentially expressed gene (DEG) analysis and weighted gene coexpression network analysis (WGCNA) are important bioinformatic methods for screening core genes. In our study, DEG analysis and WGCNA were combined to screen the hub genes, and pathway enrichment analyses were performed on the DEGs. was identified as the hub gene based on the intersection between the DEGs and the purple module in WGCNA. The expression and prognostic value of were verified in UALCAN, GEPIA2, Human Cancer Metastasis Database, Kaplan-Meier plotter, and TIMER. We identified 1974 DEGs, and 28 modules were uncovered via WGCNA. The purple module was identified as the hub module in WGCNA. was identified as the hub gene, which was upregulated in tumour tissues. Moreover, patients with GC and higher expression had worse prognoses. In addition, was suggested to play an important role in immune cell infiltration. In summary, based on DEGs and key modules related to GC, we identified as a hub gene, thereby offering novel insights into the development and treatment of GC.

摘要

胃癌(GC)在全球范围内具有较高的发病率和死亡率。差异表达基因(DEG)分析和加权基因共表达网络分析(WGCNA)是筛选核心基因的重要生物信息学方法。在本研究中,我们将 DEG 分析和 WGCNA 相结合,筛选出关键基因,并对 DEGs 进行通路富集分析。基于 DEGs 和 WGCNA 中紫色模块的交集,我们确定 为关键基因。在 UALCAN、GEPIA2、人类癌症转移数据库、Kaplan-Meier 绘图仪和 TIMER 中验证了 的表达和预后价值。我们鉴定了 1974 个 DEGs,并通过 WGCNA 发现了 28 个模块。WGCNA 中鉴定出的紫色模块为关键模块。我们确定 为关键基因,其在肿瘤组织中上调。此外,GC 患者中 表达水平较高的患者预后较差。此外,提示 可能在免疫细胞浸润中发挥重要作用。总之,基于与 GC 相关的 DEGs 和关键模块,我们确定 为关键基因,从而为 GC 的发生发展和治疗提供了新的思路。

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