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二苯甲酰甲烷两种多晶型晶体结构的新视角:量子化学和量子晶体学方法揭示的晶体堆积与氢原子位置之间的关系

A new look at two polymorphic crystal structures of dibenzoylmethane: relationship between the crystal packing and the hydrogen atom position revealed by quantum chemistry and quantum crystallography methods.

作者信息

Wojtulewski Sławomir, Strawa Jakub Wladyslaw, Tomczyk Michal, Gawel Magdalena, Brzezinski Krzysztof

机构信息

Faculty of Chemistry, University of Białystok, Ciolkowskiego 1K, Białystok, 15-245, Poland.

Department of Pharmacognosy, Faculty of Pharmacy, Medical University of Białystok, Mickiewicza 2A, Białystok, 15-230, Poland.

出版信息

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2020 Dec 1;76(Pt 6):957-966. doi: 10.1107/S2052520620012196. Epub 2020 Nov 1.

DOI:10.1107/S2052520620012196
PMID:33289708
Abstract

Chalcones, including dibenzoylmethane, are an important subgroup of natural polyphenolic compounds that exhibit a wide spectrum of pharmacological and industrial applications. Dibenzoylmethane was isolated from Hottonia palustris L. (Primulaceae). The compound was crystallized in two polymorphic forms: in monoclinic space group P2/c and orthorhombic space group Pbca. Crystal structures of the polymorphs were solved and refined against diffraction data measured at 100 and 293 K. In both crystal structures, the chalcone occurs in its keto-enol tautomeric form with the hydroxyl H atom mutually bound by two oxygen atoms rather than covalently attached to a particular oxygen atom. To explain this phenomenon in more detail, density functional theory and quantum theory of atoms in molecules based quantum chemistry calculations were applied. Additionally, high-resolution experimental data of very high quality measured for the monoclinic and orthorhombic crystals at 100 K allowed the engagement of the quantum crystallography method, based on Hirshfeld atom refinement, to determine the position of each individual H atom. It is suggested that the presence of the particular tautomeric form of dibenzoylmethane with a centred H atom position results from the π-stacking interaction between the phenyl ring and the malondialdehyde quasi-ring causes delocalization of the electron density in the latter.

摘要

查耳酮,包括二苯甲酰甲烷,是天然多酚类化合物的一个重要亚组,具有广泛的药理和工业应用。二苯甲酰甲烷是从沼生报春花(报春花科)中分离出来的。该化合物以两种多晶型形式结晶:单斜晶系空间群P2/c和正交晶系空间群Pbca。根据在100K和293K下测量的衍射数据解析并精修了多晶型物的晶体结构。在两种晶体结构中,查耳酮均以其酮-烯醇互变异构形式存在,羟基H原子通过两个氧原子相互结合,而不是共价连接到特定的氧原子上。为了更详细地解释这一现象,应用了基于密度泛函理论和分子中原子量子理论的量子化学计算。此外,在100K下对单斜晶和正交晶晶体测量的高质量高分辨率实验数据使得基于Hirshfeld原子精修的量子晶体学方法得以应用,以确定每个H原子的位置。有人认为,二苯甲酰甲烷特定互变异构形式的存在以及H原子位于中心位置,是由于苯环与丙二醛准环之间的π-堆积相互作用导致后者电子密度离域所致。

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