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Complete Genome Sequence of Citrobacter koseri Strain MPUCK001.科氏柠檬酸杆菌MPUCK001菌株的全基因组序列
Microbiol Resour Announc. 2020 Dec 10;9(50):e01228-20. doi: 10.1128/MRA.01228-20.
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Complete Genome Sequencing and Comparative Analysis of Citrobacter koseri CKNJ, a Strain Isolated from a Patient with Endogenous Endophthalmitis.完成一株源于内源性眼内炎患者的科氏柠檬酸杆菌 CKNJ 全基因组测序及比较分析。
Jpn J Infect Dis. 2022 Mar 24;75(2):148-155. doi: 10.7883/yoken.JJID.2021.334. Epub 2021 Aug 31.
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Draft Genome Sequences of -Containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri Strains.含 blaCTX-M 基因的产气肠杆菌、弗氏柠檬酸杆菌和科氏柠檬酸杆菌菌株的基因组草图序列
Genome Announc. 2018 Feb 22;6(8):e00035-18. doi: 10.1128/genomeA.00035-18.
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CkP1 bacteriophage, a S16-like myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibers.CkP1 噬菌体，一种 S16 样肌尾噬菌体，通过其长尾纤维识别柠檬酸杆菌脂多糖。
Appl Microbiol Biotechnol. 2023 Jun;107(11):3621-3636. doi: 10.1007/s00253-023-12547-8. Epub 2023 May 3.
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Citrobacter koseri folliculitis of the face.面部科斯勒枸橼酸杆菌性毛囊炎。
Infection. 2015 Oct;43(5):595-7. doi: 10.1007/s15010-015-0734-5. Epub 2015 Jan 29.
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First genome sequence of a bla-carrying Citrobacter koseri isolate collected from a patient with diarrhoea.从腹泻患者中分离到的携带 bla 基因的柠檬酸杆菌的首个基因组序列。
J Glob Antimicrob Resist. 2018 Dec;15:166-168. doi: 10.1016/j.jgar.2018.09.016. Epub 2018 Oct 3.
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Strongyloides Hyperinfection Syndrome causing fatal meningitis and septicemia by Citrobacter koseri.由科氏柠檬酸杆菌引起的导致致命性脑膜炎和败血症的类圆线虫超感染综合征。
IDCases. 2017 Sep 20;10:102-104. doi: 10.1016/j.idcr.2017.09.005. eCollection 2017.
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Myo-inositol utilization by Citrobacter koseri promotes brain infection.柠檬酸杆菌利用肌醇促进脑部感染。
Biochem Biophys Res Commun. 2019 Sep 24;517(3):427-432. doi: 10.1016/j.bbrc.2019.07.112. Epub 2019 Jul 31.
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Citrobacter koseri and Citrobacter amalonaticus isolates carry highly divergent beta-lactamase genes despite having high levels of biochemical similarity and 16S rRNA sequence homology.科氏柠檬酸杆菌和无丙二酸柠檬酸杆菌分离株尽管具有高度的生化相似性和16S rRNA序列同源性，但携带高度不同的β-内酰胺酶基因。
J Antimicrob Chemother. 2004 Jun;53(6):1076-80. doi: 10.1093/jac/dkh235. Epub 2004 May 5.
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Complete Genome Sequence of sp. Strain 32K, Isolated from Soil as a Mixed Single Colony with sp. Strain ME121.从土壤中分离得到的与sp.菌株ME121形成混合单菌落的sp.菌株32K的全基因组序列。
Microbiol Resour Announc. 2021 Mar 11;10(10):e00019-21. doi: 10.1128/MRA.00019-21.
本文引用的文献
1
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
2
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
3
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
4
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
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Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.相同的细菌群体定殖于早产儿的肠道、皮肤和口腔微生物群中，并表现出不同的原位生长速率。
Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10.
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Transplantation of human skin microbiota in models of atopic dermatitis.人类皮肤微生物群在特应性皮炎模型中的移植
JCI Insight. 2016 Jul 7;1(10). doi: 10.1172/jci.insight.86955.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
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Abscess caused by Citrobacter koseri infection: three case reports and a literature review.科氏柠檬酸杆菌感染所致脓肿：三例报告及文献综述
Intern Med. 2011;50(12):1333-7. doi: 10.2169/internalmedicine.50.4962. Epub 2011 Jun 15.
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A nosocomial outbreak due to novel CTX-M-2-producing strains of Citrobacter koseri in a hematological ward.血液科病房中由产新型CTX-M-2的科氏柠檬酸杆菌菌株引起的医院感染暴发。
Jpn J Infect Dis. 2006 Feb;59(1):69-71.
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The serology of Citrobacter koseri, Levinea malonatica, and Levinea amalonatica.科氏柠檬酸杆菌、无丙二酸勒维菌和无丙二酸勒维氏菌的血清学
J Med Microbiol. 1974 May;7(2):155-61. doi: 10.1099/00222615-7-2-155.
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