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针在干草堆中——以具鞘领毛滴虫新种 Enibas thessalia(刺丝胞动物门,刺丝胞科)为例对序列到形态的映射。

A Needle in the Haystack - Mapping Sequences to Morphology Exemplified by the Loricate Choanoflagellate Enibas thessalia sp. nov. (Acanthoecida, Acanthoecidae).

机构信息

General Ecology, Institute of Zoology, Biocenter Cologne, University of Cologne, Zuelpicher Straße 47b, 50674 Cologne, Germany.

General Ecology, Institute of Zoology, Biocenter Cologne, University of Cologne, Zuelpicher Straße 47b, 50674 Cologne, Germany.

出版信息

Protist. 2021 Feb;172(1):125782. doi: 10.1016/j.protis.2020.125782. Epub 2020 Nov 28.

Abstract

Environmental sequencing surveys unveil an unexpected magnitude of protist biodiversity and help to understand environmental community structure as well as biogeographical patterns. The interpretation of these data is still hindered by the lack of a verified and reliable reference database, which is the important basis for all analyses. References should rely on detailed and valid taxonomical descriptions including both morphology and autecological properties. In fact, obtaining such data is still a major challenge as cultivation-based approaches are very selective. In the present study, we highlight the potential to resample habitats which showed phylogenetically interesting sequences from environmental molecular surveys. We have been able to reveal a choanoflagellate species with the use of a single cell isolation approach in order to achieve a morphological description to the target sequence. This new species, Enibas thessalia sp. nov. now extends a recently described monospecific genus. In addition, we illustrate a nudiform lorica reproduction of the genus Enibas by observation of living cells. The genus belongs to the family of Acanthoecidae, which comprises five genera. The morphology of the genus Enibas shows a striking resemblance to the genus Stephanoeca, which belongs to the other family of loricate choanoflagellates, the Stephanoecidae, indicating that morphology alone might not reflect phylogenetic relations. We demonstrate that mapping sequences to a taxonomical description of species is a valuable tool to verify the organism behind an environmental amplicon. We emphasize the urgent need of integrative taxonomy matching molecular data with morphological features to verify the outcome of phylogenetic analyses.

摘要

环境测序调查揭示了原生生物多样性的惊人规模,并有助于了解环境群落结构和生物地理模式。这些数据的解释仍然受到缺乏经过验证和可靠的参考数据库的阻碍,而该数据库是所有分析的重要基础。参考文献应依赖于详细和有效的分类学描述,包括形态和自生特性。事实上,由于基于培养的方法非常具有选择性,因此获取此类数据仍然是一个主要挑战。在本研究中,我们强调了从环境分子调查中重新采样具有系统发育意义的序列的栖息地的潜力。我们已经能够使用单细胞分离方法揭示出一种粘菌物种,以实现目标序列的形态描述。这种新物种,Enibas thessalia sp. nov. 现在扩展了最近描述的单种属。此外,我们通过观察活细胞展示了 Enibas 属的 nudiform 披甲繁殖。该属属于棘毛科,该科包括五个属。Enibas 属的形态与 Stephanoeca 属非常相似,后者属于另一个有披甲的粘菌科 Stephanoecidae,这表明仅形态可能无法反映系统发育关系。我们证明,将序列映射到物种的分类学描述是验证环境扩增子背后的生物体的有用工具。我们强调需要进行综合分类学,将分子数据与形态特征相匹配,以验证系统发育分析的结果。

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