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一种潜在的抗癌二氢嘧啶衍生物及其与蛋白质的结合机制的多谱、分子对接和分子动力学模拟以及其在计算机上的毒性和代谢特征。

A potential anticancer dihydropyrimidine derivative and its protein binding mechanism by multispectroscopic, molecular docking and molecular dynamic simulation along with its in-silico toxicity and metabolic profile.

机构信息

Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia.

Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia.

出版信息

Eur J Pharm Sci. 2021 Mar 1;158:105686. doi: 10.1016/j.ejps.2020.105686. Epub 2020 Dec 26.

Abstract

Human serum albumin (HSA) is the core protein in the systemic circulation and has a fundamental role in transportation and distribution of ligands in-vivo. In this study, a newly synthesized and patented anticancer dihydropyrimidine derivative; 4-(4-ethoxyphenyl)-5-(3,4,5- trimethoxybenzoyl)-3,4-dihydropyrimidin-2(1H)-one (DHP) was evaluated for its binding to HSA. Ligand-HSA interaction is significant factor to attribute the toxicity or therapeutic potential to a ligand. Multi-spectroscopic studies combined with molecular modelling and molecular dynamic simulation (MDS) were conducted to understand the HSA-DHP binding mechanism. In-silico evaluation of DHP for its toxicity and metabolism was also conducted. Reduction in the binding constants was observed from 6.71 × 10 - 4.5 × 10 at increased temperatures which indicates moderate binding and the interaction was found to follow a static quenching mechanism. Further, Site I on HSA for DHP was established by competition with site specific markers and the results were supported by molecular docking. The stability of the HSA-DHP complex was established with MDS studies. Thermodynamics parameters revealed involvement of hydrogen bonding and van der Waals forces for HSA-DHP binding. An in-silico evaluation of DHP for its toxicity and metabolism provided that the synthesized compound was potentially safe and could be a promising candidate for further studies.

摘要

人血清白蛋白(HSA)是全身循环中的核心蛋白,在体内配体的运输和分布中起着基本作用。在这项研究中,评估了一种新合成的专利抗癌二氢嘧啶衍生物;4-(4-乙氧基苯基)-5-(3,4,5-三甲氧基苯甲酰基)-3,4-二氢嘧啶-2(1H)-酮(DHP)与 HSA 的结合。配体-HSA 相互作用是将毒性或治疗潜力归因于配体的重要因素。进行了多光谱研究,并结合分子建模和分子动力学模拟(MDS)来了解 HSA-DHP 结合机制。还进行了 DHP 毒性和代谢的计算机评估。随着温度的升高,结合常数从 6.71×10 - 4.5×10 - 4减少,这表明中等结合,并且发现相互作用遵循静态猝灭机制。此外,通过与特定于位点的标记物竞争,确定了 HSA 上用于 DHP 的位点 I,并通过分子对接支持了该结果。通过 MDS 研究建立了 HSA-DHP 复合物的稳定性。热力学参数表明氢键和范德华力参与了 HSA-DHP 结合。DHP 毒性和代谢的计算机评估表明,合成化合物具有潜在的安全性,可能是进一步研究的有前途的候选物。

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