Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.
Quantitative and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.
Biosystems. 2021 Mar;201:104333. doi: 10.1016/j.biosystems.2020.104333. Epub 2020 Dec 25.
In modern cells, chromosomal genes composed of DNA encode multi-subunit protein/RNA complexes that catalyze the replication of the chromosome and cell. One prevailing theory for the origin of life posits an early stage involving self-replicating macromolecules called replicators, which can be considered genes capable of self-replication. One prevailing theory for the genetics of aging in humans and other organisms is antagonistic pleiotropy, which posits that a gene can be beneficial in one context, and detrimental in another context. We previously reported that the conceptual simplicity of molecular replicators facilitates the generation of two simple models involving antagonistic pleiotropy. Here a third model is proposed, and each of the three models is presented with improved definition of the time variable. Computer simulations were used to calculate the proliferation of a hypothetical two-subunit replicator (AB), when one of the two subunits (B) exhibits antagonistic pleiotropy, leading to an advantage for B to be unstable. In model 1, instability of B yields free A subunits, which in turn stimulate the activity of other AB replicators. In model 2, B is lost and sometimes replaced by a more active mutant form, B'. In model 3, B becomes damaged and loses activity, and its instability allows it to be replaced by a new B. For each model, conditions were identified where instability of B was detrimental, and where instability of B was beneficial. The results are consistent with the hypothesis that antagonistic pleiotropy can promote molecular instability and system complexity, and provide further support for a model linking aging and evolution.
在现代细胞中,由 DNA 组成的染色体基因编码多亚基蛋白/RNA 复合物,这些复合物催化染色体和细胞的复制。一种流行的生命起源理论假设早期涉及自复制大分子,称为复制子,可以被认为是能够自我复制的基因。人类和其他生物体衰老遗传学的一个流行理论是拮抗多效性,它假设一个基因在一种情况下是有益的,而在另一种情况下是有害的。我们之前报道过,分子复制子的概念简单性有助于生成涉及拮抗多效性的两个简单模型。这里提出了第三个模型,并且为每个模型都提出了改进的时间变量定义。计算机模拟用于计算假设的二聚体复制子 (AB) 的增殖,当两个亚基之一 (B) 表现出拮抗多效性时,导致 B 的不稳定性具有优势。在模型 1 中,B 的不稳定性产生游离的 A 亚基,A 亚基转而刺激其他 AB 复制子的活性。在模型 2 中,B 丢失,并且有时被更活跃的突变形式 B'取代。在模型 3 中,B 受损并失去活性,其不稳定性允许其被新的 B 取代。对于每个模型,确定了 B 的不稳定性有害的条件,以及 B 的不稳定性有益的条件。结果与拮抗多效性可以促进分子不稳定性和系统复杂性的假设一致,并为将衰老和进化联系起来的模型提供了进一步的支持。