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涉及复制子亚基稳定性差异的复制子增殖模型。

Models of Replicator Proliferation Involving Differential Replicator Subunit Stability.

作者信息

Li Zewei, Lyu Runhe, Tower John

机构信息

Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, 1050 Childs Way, RRI201, Los Angeles, CA, 90089-2910, USA.

出版信息

Orig Life Evol Biosph. 2018 Sep;48(3):331-342. doi: 10.1007/s11084-018-9561-x. Epub 2018 Sep 10.

DOI:10.1007/s11084-018-9561-x
PMID:30203409
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6237645/
Abstract

Several models for the origin of life involve molecules that are capable of self-replication, such as self-replicating polymers composed of RNA or DNA or amino acids. Here we consider a hypothetical replicator (AB) composed of two subunits, A and B. Programs written in Python and C programming languages were used to model AB replicator abundance as a function of cycles of replication (iterations), under specified hypothetical conditions. Two non-exclusive models describe how a reduced stability for B relative to A can have an advantage for replicator activity and/or evolution by generating free A subunits. In model 1, free A subunits associate with AB replicators to create AAB replicators with greater activity. In simulations, reduced stability of B was beneficial when the replication activity of AAB was greater than two times the replication activity of AB. In model 2, the free A subunit is inactive for some number of iterations before it re-creates the B subunit. A re-creates the B subunit with an equal chance of creating B or B', where B' is a mutant that increases AB' replicator activity relative to AB. In simulations, at moderate number of iterations (< 15), a shorter survival time for B is beneficial when the stability of B is greater than the inactive time of A. The results are consistent with the hypothesis that reduced stability for a replicator subunit can be advantageous under appropriate conditions.

摘要

几种生命起源模型涉及能够自我复制的分子,例如由RNA、DNA或氨基酸组成的自我复制聚合物。在这里,我们考虑一种由两个亚基A和B组成的假设复制体(AB)。在特定的假设条件下,使用Python和C编程语言编写的程序来模拟AB复制体丰度作为复制周期(迭代次数)的函数。有两个并非相互排斥的模型描述了相对于A而言B稳定性降低如何通过产生游离的A亚基而对复制体活性和/或进化具有优势。在模型1中,游离的A亚基与AB复制体结合以产生具有更高活性的AAB复制体。在模拟中,当AAB的复制活性大于AB复制活性的两倍时,B稳定性降低是有益的。在模型2中,游离的A亚基在重新创建B亚基之前的若干次迭代中是无活性的。A以相等的概率重新创建B或B',其中B'是一种相对于AB能增加AB'复制体活性的突变体。在模拟中,在中等迭代次数(<15)时,当B的存活时间大于A的无活性时间时,B较短的存活时间是有益的。这些结果与以下假设一致:在适当条件下,复制体亚基稳定性降低可能是有利的。