Li Zewei, Lyu Runhe, Tower John
Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, 1050 Childs Way, RRI201, Los Angeles, CA, 90089-2910, USA.
Orig Life Evol Biosph. 2018 Sep;48(3):331-342. doi: 10.1007/s11084-018-9561-x. Epub 2018 Sep 10.
Several models for the origin of life involve molecules that are capable of self-replication, such as self-replicating polymers composed of RNA or DNA or amino acids. Here we consider a hypothetical replicator (AB) composed of two subunits, A and B. Programs written in Python and C programming languages were used to model AB replicator abundance as a function of cycles of replication (iterations), under specified hypothetical conditions. Two non-exclusive models describe how a reduced stability for B relative to A can have an advantage for replicator activity and/or evolution by generating free A subunits. In model 1, free A subunits associate with AB replicators to create AAB replicators with greater activity. In simulations, reduced stability of B was beneficial when the replication activity of AAB was greater than two times the replication activity of AB. In model 2, the free A subunit is inactive for some number of iterations before it re-creates the B subunit. A re-creates the B subunit with an equal chance of creating B or B', where B' is a mutant that increases AB' replicator activity relative to AB. In simulations, at moderate number of iterations (< 15), a shorter survival time for B is beneficial when the stability of B is greater than the inactive time of A. The results are consistent with the hypothesis that reduced stability for a replicator subunit can be advantageous under appropriate conditions.
几种生命起源模型涉及能够自我复制的分子,例如由RNA、DNA或氨基酸组成的自我复制聚合物。在这里,我们考虑一种由两个亚基A和B组成的假设复制体(AB)。在特定的假设条件下,使用Python和C编程语言编写的程序来模拟AB复制体丰度作为复制周期(迭代次数)的函数。有两个并非相互排斥的模型描述了相对于A而言B稳定性降低如何通过产生游离的A亚基而对复制体活性和/或进化具有优势。在模型1中,游离的A亚基与AB复制体结合以产生具有更高活性的AAB复制体。在模拟中,当AAB的复制活性大于AB复制活性的两倍时,B稳定性降低是有益的。在模型2中,游离的A亚基在重新创建B亚基之前的若干次迭代中是无活性的。A以相等的概率重新创建B或B',其中B'是一种相对于AB能增加AB'复制体活性的突变体。在模拟中,在中等迭代次数(<15)时,当B的存活时间大于A的无活性时间时,B较短的存活时间是有益的。这些结果与以下假设一致:在适当条件下,复制体亚基稳定性降低可能是有利的。